1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTGATTTCACCATTTGACGTGTACTTAAATTCTAAATTGATCATACACAACTATGAAGTTTGGAGACTCATTACCAATTTCTTTTACTTTGGCAAACTCGgtaattatctgcatccagatgctcatgcagttctttgtggttaatccttcattcacataaggcttctaaaatgccgcatcacactacgaaagtgccggct...
species | Physcomitrella patens |
transcript | PP1S68_188V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTATGAATTTTGGAGACTCATTACCAATTTCTTTTACTTTGGCAAACTCG ATTTGGATTTCCTCTTTCATATGTTCTTTTTGGCAAGGTACTGCAAACTGTEST: gi|19789674|gb|BQ041445.1|BQ041445
genomic: CTATGAAGTTTGGAGACTCATTACCAATTTCTTTTACTTTGGCAAACTCGgtaattatct ... ataattgcagATTTGGATTTCCTCTTTCATATGTTCTTTTTGGCAAGGTACTGCAAACTGT
EST: CTATGAAGTTTGGAGACTCATTACCAATTTCTTTTACTTTGGCAAACTCG ATTTGGATTTCCTCTTTCATATGTTCTTTTTGGCAAGGTACTGCAAACTGTEST: gi|100414138|gb|BY975099.1|BY975099
genomic: CTATGAAGTTTGGAGACTCATTACCAATTTCTTTTACTTTGGCAAACTCGgtaattatct ... ataattgcagATTTGGATTTCCTCTTTCATATGTTCTTTTTGGCAAGGTACTGCAAACTGT
EST: CTATGAAGTTTGGAGACTCATTACCAATTTCTTTTACTTTGGCAAACTCG ATTTGGATTTCCTCTTTCATATGTTCTTTTTGGCAAGGTACTGCAAACTGT
genomic: CTATGAAGTTTGGAGACTCATTACCAATTTCTTTTACTTTGGCAAACTCGgtaattatct ... ataattgcagATTTGGATTTCCTCTTTCATATGTTCTTTTTGGCAAGGTACTGCAAACTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATTTCACCATTTGACGTGTACTTAAATTCTAAATTGATCATACACAACTATGAAGTTTGGAGACTCATTACCAATTTCTTTTACTTTGGCAAACTCGgtaattatctgcatccagatgctcatgcagttctttgtggttaatccttcattcacataaggcttctaaaatgccgcatcacactacgaaagtgccggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA