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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa...

Basic information

species Physcomitrella patens
transcript PP1S68_116V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os03g13300.1 (Oryza sativa), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcg--agcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcat-tgcaccccaagagtgtatttagtgcttgcgaa
 || || ||||||||||| ||||| || |||||||| ||| | ||  |||||||||||||| | |||||||||||||||||  | ||||||||||| ||||| |   | |||  || ||||   | |    || | |||   |          |||  |   ||   |    ||  | | |  |   | |         |   
CACCACGTGGATGGAGCCCGAGTGCGACAAGCTCATCATGGCCGCCATCAACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAGgtacagcaccctgcaggcatctctgcttcgttgaattttctcctatcacctcgcgttttctcgccgccgcgcgcggctcgaatgcacactggaaatcccc---

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os04g37460.1 (Oryza sativa), 5'ss of exon 1
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa
 || || ||||||||||| ||||| || |||||||| ||| | ||  |||||||||||||| | |||||||| ||||||||  | ||||||||||| |||||      |     ||  |  |   |||    || |   |||||||   | || | | |||  |     | | || | ||                    
CACCACGTGGATGGAGCCCGAGTGCGACAAGCTCATGATGGCCGCCATCAACAAGAACTACGTCGACATGGATGAGTACCCCGTCACCACCGAGCTCCAGgtaaacaacc----accacgacaacaacaaacacctct-gcatctgcacaacg-catcatgtctaacacggatccgatgaacag----------------

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os03g51080.1 (Oryza sativa), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa--
 || || ||||||||||| ||||| || ||||||||   | |  |  |||||||||||||| | |||||||||||||||||  | |||||||| || ||||| |   |||     |  ||| | |     |        ||  |       |  | |  |  |  | ||   |     | ||   ||        || ||  
CACCACGTGGATGGAGCCCGAGTGCGACAAGCTCATCCAGGCCTCCGTCAACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAACTCCAGgtact--cctcccccccaccttgcttttccgccgccgcggccgccacccccctccctcctcatcccgttcgtcgtttcgcgttcgttattacgccgcaaatt

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os04g37500.1 (Oryza sativa), 5'ss of exon 1
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa-------
 || || ||||||||||| ||||| || | ||||||  |    ||  ||||||||||||||   |||||||||||||||||  | ||||||||||| ||||  | |||  | | |||  |      |  |   ||     | ||  |      |||||    |||| |||      | |   |       ||     |         
CACCACCTGGATGGAGCCCGAGTGCGACAGGCTCATCCTCGAGGCCATCAACAAGAACTACGCCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAGg--caagcaatcaaacaaaccaaaccatataccctcgtctcctccatatcctttcgttgca-ttgcgttgtggttgacgtacgacgacgatggccctggcgttgcag

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os08g36320.3 (Oryza sativa), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa------
 || || ||||||||||| ||||| || |||||||| |||    |  | |||||||||||| | |||||||||||||||||  | ||||| ||||| |||||  ||    ||| ||  | | ||     |   || |     |||   |   |   | || |||||  |      |||| ||| | | |   |||  |||      
CACCACGTGGATGGAGCCCGAGTGCGACAAGCTCATCATGGACTCCGTTAACAAGAACTACGTCGACATGGACGAGTACCCTGTCACCACGGAGCTCCAGgtcggaa---ttaaaccacatgggatctttcttctattttgttctccgggctg--ataatacttgcccttttggacaagggtgaagtcaa-actttagaatctttg

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G098875_T02 (Zea mays), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatct-gttgatcgtcgttatgcttgcattgcacccca--agagtgtatttagtgcttgcgaa-------------------------------------
 || || ||||||||||| ||||| || |||||||| ||| | ||  |||||||||||||| | |||||||||||||||||  | ||||||||||| ||||| |       |   || |||| | ||||     ||||| |     |||  | || |     |    |       |||  |||    | | ||   ||| |                                       
CACCACCTGGATGGAGCCCGAGTGCGACAAGCTCATCATGGCCGCCATCAACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTCCAGgtaca---tcatcatcaccctcagcaacgatctttttgatcggagagttcttggttggctgaccaaaagccagttccagcagaaccgactcagattttgtgtcttctctctcctgacactcgactgcggcgacattgcag

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM5G826838_T01 (Zea mays), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgt-cgttatgcttgcattgc-accccaagagtgtatttagtgcttgcgaa
 || || ||||||||||| ||||| || ||||||||   | |  |  |||||||||||||| | |||||||||||||||||  | ||||||||||| ||||| ||  |  |  | |   |  | |        | | || |     |||||||  |   |    || || || |   |  |    |  | |  || ||    
CACCACGTGGATGGAGCCCGAGTGCGACAAGCTCATCCAGGCCTCCGTCAACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACCGAGCTGCAGgtacgctcgctgcgccgctcctgcttgttgctccgtcgatcgctcattgatcgagccgcagatatgtatggctagttccgggtcatgatgatagcgtggt--

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G017110_T01 (Zea mays), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgc--ttgcattgcaccccaagagtgtatttagtgcttgcgaa---
 || || ||||||||||| ||||| || |||||||| |||    |  |||||||||||||| | |||||||||||||||||  | ||||| ||||| |||||   ||  | |   || |   |  || || ||      |        |||    | || |     | |  | |  | |    |  |    ||    |  ||   
CACCACGTGGATGGAGCCCGAGTGCGACAAGCTCATCATGGACTCCATCAACAAGAACTACGTCGACATGGACGAGTACCCCGTCACCACTGAGCTCCAGgt---agtatgttagcaccacag--aaggtagaagaaaggagatcagagattagagctaggaagacggaaggaagacgagagctagacggggtctaagtaaattg

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G101069_T01 (Zea mays), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaac--gtggactttgagc-atctgttgatcg-tcgttatgct-tgcattgcaccccaagagtgtatttagtgcttgcgaa
||| || ||||||||||| ||||| || ||||||||   |||  |  |||||||||||||| | |||||||| ||||||||  | ||||||||||| ||||| ||   || |         ||| | |     | ||  || | |||  | | ||| ||| | |  |  ||||    | |      || ||| |       |   
GACCACTTGGATGGAGCCCGAGTGCGACAAGCTCATCCAGTCCTCCATCAACAAGAACTACGTCGACATGGATGAGTACCCCGTCACCACCGAGCTCCAGgtacgcttctgtctctgctggcggcagctacctggctcagatcgatcgatcggtcggtcgatctaatacgcatgtgtctctgtacttggattgaaacggaacag-

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA16G34450.1 (Glycine max), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatg--cttgcattgcacccc----aagagtgtatttagtgcttgcgaa
||| || |||||||||||||||||||| |||||||| ||| || | || |||||||||||| |||||||||| ||||| ||  | ||||| ||||| |||||  |   |||    ||   |   |   ||     || |  || || | ||     ||| |  |||| | | ||  |     || |  |  ||||     |     
GACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATAATGGCTTCACTTAACAAGAACTACGTTGACATGGATGAGTATCCTGTCACCACTGAGCTCCAGgtctgtcacttctctcagtatatttgctgtctttatt-attatatgatcatgacatttaggtccttgaagttcagtctgtcaaaaaaggattttaaaaaat-----

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA18G04940.1 (Glycine max), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtg--cgagcctttagacatcc-----tcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa
|||||| ||||||||||| ||||||||||| ||||| ||| ||||  | || ||||||||  |||||||||||||||||||  | ||||| ||||| |||||     | |||    | |||      ||| ||   |   | ||   |||||  |  |  || ||||  |    ||     ||      | || |  ||| |     
GACGACTTGGATGGAGCCAGAGTGTGATAAACTCATCATGGCTGCCATTAATAAGAACTATGTTGACATGGACGAGTACCCTGTCACCACTGAGCTACAGgtaactaaccctaccaatatctatatatcgatactatcttccttcttcatcttctctttctctttattttattttttttttccttcttggaatgt--tgcct-----

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA09G29900.1 (Glycine max), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagt---gcttgcgaa---
||| || |||||||||||||||||||| |||||||| ||| || | || ||||| |||||  |||| ||||| ||||| ||  | ||||| ||||| |||||  |   || |      | ||  |  | |   | ||||| || |     || |  ||||   || |||    |      ||   |  |||   |  ||  ||   
GACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATAATGGCTTCACTTAACAAAAACTATGTTGATATGGATGAGTATCCTGTCACCACTGAGCTCCAGgtctg--tctgtgtgtcacttctctctctt---ccttgagtattttggtgtctttattatatctg-attatgacatttaggtccttgaagttcggtctgtcaaaaa

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA08G09650.1 (Glycine max), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagaca-tcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa--------------
||| || |  |||||    |||||  | || || || |||    |  |||||||||||||  |||||||||||||||| || || ||||| || ||||| |||||  |   ||   | |  |   |    | || | |    || | ||| |  | |   |   | | |  |||    |   |   ||   || ||  | |              
GACCACTTCCATGGAAGAAGAGTGCAACAAACTAATCATGGAATCCATCAACAAGAACTATGTTGACATGGACGAGTATCCTATCACCACTGACCTTCACgtgcgttctcataattaatgttttttcctattgaatatttatattttttggtgtttgactttaatccctatcactaacatttttctttctctggttttgtacctttcgaaaacag

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA02G40840.1 (Glycine max), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa---------
|||||| |||||||| ||||||||||| || ||||| ||| ||||  | ||||| || ||| | |||||||| ||||||||  | ||||| ||||| ||||   |   |     ||||   |  ||   | ||  || | ||  | || || ||||||    |     ||      || | | || |   | | |  ||          
GACGACGTGGATGGAACCTGAGTGTGACAAACTCATCATGGCTGCCATTAACAAAAATTACGTCGACATGGATGAGTACCCTGTCACCACTGAGCTCCAGgcaagtatc-----acatataccatac--ttgatattaatcaattattaat-gtcgttcaattaaggatgagagataaca-tatactatattcgtaggagtattaattt

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv01s0011g06600.t01 (Vitis vinifera), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggt----aacgtggactttgagcatctgttgatcgtcgttatgcttg-cattgcaccccaagagtgtatttagtgcttgcgaa
||| || |||||||||||||| ||||||||||| || ||| ||||  | |||||||||||  | |||||||| || |||||  ||||||| |||||||||||  |   || |     | ||        || ||     |  |  |    |   |    | |  ||| | || ||  | || |    |       | |       
GACTACTTGGATGGAGCCTGAATGTGATAAGCTTATGATGGCTGCCATAAACAAGAACTATGTGGACATGGATGAATACCCGGTTACCACTGAGCTTCAGgtaagtctctcttatttttctttaccctaaatgttccactctactactcctccgttactggttagctggtcactgtccaccgaagcggcgaccgatccaa-----

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv04s0079g00600.t01 (Vitis vinifera), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgct-tgcattgcaccccaagagtgtatttagtgcttgcgaa------
||| ||||||||||| || ||||| |||||||| || ||| |  |  | |||||||||||| |||| ||||||||||||||  | ||||| ||||| ||||| |   ||| |     | | |  |  | |   | |     || | ||  | ||| || |  | |||  | ||  |  ||| || ||||  | ||||  |       
GACAACATGGATGGAACCAGAGTGCGATAAGCTAATCATGGCCTCCATTAACAAGAACTACGTTGATATGGACGAGTACCCTGTCACCACTGAGCTACAGgttcctccctct-----taccccatttcctattcctactctatttcttccttgtccttttcttctgctatccaatctcaga-tg-atttgattcttgtcagggattt

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv01s0011g06610.t01 (Vitis vinifera), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa---------------
 || ||||||||||| ||||||||||||||||| ||       ||  |||||||||| ||  | |||||||| || |||||| | || || |||||||||||  ||    | ||| |   |||     ||  |  || | ||| |||   |    ||| ||||| || || |  | || |||||  ||| |  ||  |                 
CACCACATGGATGGAACCTGAGTGTGATAAGCTGATGGCAGAAGCCATCAACAAGAATTATGTAGACATGGATGAATACCCAGTCACAACTGAGCTTCAGgtaaga---ctcagagagg-tcgagggtgtatatgttta-catgtgtatgtgtgtgtt-tgcttacaatggaatcaaacagtgttcttattttttctgttcatttttgttccaag

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ18071 (Selaginella moellendorffii), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcgg----taacgtggactttgagcatc----tgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa--------------------------
 || || ||||||||||| ||||||||||||||| | ||| |  ||||||||||||| ||||| || ||||||||||| ||  | ||||| ||||| ||||| |||      | | ||| |  |    | || | |  | |  ||||     | || || |   ||  |  ||  | |     |   || || |||  | ||    ||                          
CACCACTTGGATGGAGCCCGAGTGTGATAAGCTCGTCATGGCCTCGCTCAACAAGAATTACATCGATATGGACGAGTATCCGGTGACCACAGAGCTCCAGgttcgaaaaga-aaatatctttcgagcatgactttgcatgttcgcattgttttcttaattggtttttcgtgtgagtggagaaacgctagcgtttttttttctcttaaattaatggttttttgttttgctcgtag

upper sequence: PP1S68_116V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ36644 (Selaginella moellendorffii), 5'ss of exon 2
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctg--ttgatcgtcgttatgcttgcat-tgcaccccaagagtgtatttagtgcttgcgaa--------------------------
 || || ||||||||||| |||||||| |||||| | ||| |  ||||||||||||| ||||| || ||||||||||| ||  | ||||| ||||| ||||| |||      | | |||    | | | || ||||||    | ||  ||| |  |  | ||| ||     || | | | || || | |||  | ||    ||                          
CACCACTTGGATGGAGCCCGAGTGTGACAAGCTCGTCATGGCCTCGCTCAACAAGAATTACATCGATATGGACGAGTATCCGGTGACCACAGAGCTCCAGgttcgaaaaga-aaatatctctcg-agcatg-actttgcatgtttgcattgttttttttaatggtttttcgtgaaacgctagcgttt-tttttttctcttaaattaatggttttttgttttgctcgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162186448|gb|FC363004.1|FC363004
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100431291|gb|BY960123.1|BY960123
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTTGT-CAATGCACCTATTGAGGA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTT-GTTCAATGCACCTATTGAGGA
EST: gi|162235796|gb|FC412347.1|FC412347
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|18329964|gb|BJ161970.1|BJ161970
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTG
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTG
EST: gi|67508354|gb|BJ941222.1|BJ941222
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100372456|gb|BY985608.1|BY985608
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|18356538|gb|BJ188597.1|BJ188597
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100443357|gb|BY963653.1|BY963653
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100421503|gb|BY976211.1|BY976211
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGNA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|18354192|gb|BJ186248.1|BJ186248
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100370735|gb|BY948490.1|BY948490
EST:     CTACATTGACATTGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: CTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100431121|gb|BY960037.1|BY960037
EST:     ACAAGAACTACATTGACATGGACGAGTACCCNATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100404166|gb|BY955288.1|BY955288
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100371483|gb|BY968001.1|BY968001
EST:     TTACCACCGAGCTTCAG                         GACCGACGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: TTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100431765|gb|BY978495.1|BY978495
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100389016|gb|BY952220.1|BY952220
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATNGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100397278|gb|BY972419.1|BY972419
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100358153|gb|BY965499.1|BY965499
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|67718142|gb|BJ968401.1|BJ968401
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|18343502|gb|BJ175540.1|BJ175540
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100379799|gb|BY949950.1|BY949950
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGCTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100412451|gb|BY974740.1|BY974740
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGGA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|208398118|gb|DC908347.1|DC908347
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAN                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGANGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100433540|gb|BY960587.1|BY960587
EST:     ACAAGAACTACATTGACATGGACGAGTACTCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100422649|gb|BY976479.1|BY976479
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100382858|gb|BY986944.1|BY986944
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100440223|gb|BY962125.1|BY962125
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGGTTCA-TGCACCTATTGAGGA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTG-TTCAATGCACCTATTGAGGA
EST: gi|100389596|gb|BY952402.1|BY952402
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|208377786|gb|DC940898.1|DC940898
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100414435|gb|BY992773.1|BY992773
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100436799|gb|BY979531.1|BY979531
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|100352095|gb|BY983033.1|BY983033
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAA
EST: gi|67572688|gb|BJ945512.1|BJ945512
EST:     ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAG                         GACCGATGCGTGAACATGGTGGCTCGTTTGTTCA
genomic: ACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 42

GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcct ... tttcgtgtagGACCGATGCGTGAACATGGTGGCTCGTTTGTTCAATGCACCTATTGAGGAAGGTGAACAAGCTATCGGAGCTGGTACAGTGGGATCCTCAGAAGCAATCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGACATGGATGGAGCCTGAGTGTGATAAGCTCATTATGTCTGCGCTCAACAAGAACTACATTGACATGGACGAGTACCCAATTACCACCGAGCTTCAGgtgcgagcctttagacatcctcggtaacgtggactttgagcatctgttgatcgtcgttatgcttgcattgcaccccaagagtgtatttagtgcttgcgaa

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT