1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTAGAATCTTTGAGCCAGAGTGGCTACACTAAGAATCTCCAAAGAGGTCGTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAAgtacgaacactctgacgtgaatcccttgctgtatacattgccttacaatcggttcaagtaacccctttctgtctttgttactttatattggcttggtttcgagtcttttctacaactcagtttgtgctaaatattattcgtatcgtgtag
species | Physcomitrella patens |
transcript | PP1S67_231V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAA GTGCATGCGGACTTTGAGACTTATGGTAGCGCTGTCGGATTGAGCACCGTTEST: gi|162257462|gb|FC433323.1|FC433323
genomic: GTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAAgtacgaacac ... tatcgtgtagGTGCATGCGGACTTTGAGACTTATGGTAGCGCTGTCGGATTGAGCACCGTT
EST: GTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAA GTGCATGCGGACTTTGAGACTTATGGTAGCGCTGTCGGATTGAGCACCGTTEST: gi|162155569|gb|FC331013.1|FC331013
genomic: GTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAAgtacgaacac ... tatcgtgtagGTGCATGCGGACTTTGAGACTTATGGTAGCGCTGTCGGATTGAGCACCGTT
EST: GTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAA GTGCATGCGGACTTTGAGACTTATGGTAGCGCTGTCGGATTGAGCACCGTTEST: gi|162254871|gb|FC430848.1|FC430848
genomic: GTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAAgtacgaacac ... tatcgtgtagGTGCATGCGGACTTTGAGACTTATGGTAGCGCTGTCGGATTGAGCACCGTT
EST: GTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAA GTGCATGCGGACTTTGAGACTTATGGTAGCGCTGTCGGATTGAGCACCGTT
genomic: GTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAAgtacgaacac ... tatcgtgtagGTGCATGCGGACTTTGAGACTTATGGTAGCGCTGTCGGATTGAGCACCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAGAATCTTTGAGCCAGAGTGGCTACACTAAGAATCTCCAAAGAGGTCGTGCTGCAGCTGTCATCGTTCTTGCTCCAACCCGCGAACTCGCTAAACAAgtacgaacactctgacgtgaatcccttgctgtatacattgccttacaatcggttcaagtaacccctttctgtctttgttactttatattggcttggtttcgagtcttttctacaactcagtttgtgctaaatattattcgtatcgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG