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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGGAGCAAGGAGCCATCCCCGCGCAAGTCCATCGACACGTTTGGGCAGAGAACATCCGTGTACAGGGGCGTGACTAGGTGGGTGTGGATGGGTGCGAgctgtatgttgtgagcgagtgagggtcggtcgcagatgtgttgcag

Basic information

species Physcomitrella patens
transcript PP1S66_282V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S66_282V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G021573_T01 (Zea mays), 5'ss of exon 2
--------------------GCTGGGAGCAAGGAGCCATCCCCGCGCAAGTCCATCGACACGTTTGGGCAGAGAACATCCGTGTACAGGGGCGTGACTAGGTG----GGTGTGGATGGGTGCGAgctgtatgttgtgagcgagtgagggtcggtcgcagatgtgttg-cag-----------------------------
                    |  ||   |||| || |    |  |||||||||||||||||||||||||||||||| |||  ||| |||||||| || ||||     | |    | |  |    ||| |   |||||    |        | |   |   ||| | | |||                             
GGAAGAGGAGCACCGGGAAGGGAGGCCACAAGCAGACCGTGCACCGCAAGTCCATCGACACGTTTGGGCAGAGAACCTCCCGGTATAGGGGCGTCACCAGgtaatctgcttaccaagatttttcgcttttccttgtgtcatatctctttgctgcgccttttgtttcgtcagtaggattcgtacggtggcattgcttagtg

upper sequence: PP1S66_282V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G146688_T01 (Zea mays), 5'ss of exon 2
-----------------GCTGGGAGCAAGGAGCC---ATCCCCGCGCAAGTCCATCGACACGTTTGGGCAGAGAACATCCGTGTACAGGGGCGTGACTAGGTGGGTGTGGATGGGTG-------CGAgctgtatgttgtgagcgagtgagggtcggtc-gcagatgtgttgcag---------------------------------------
                 || |||   ||| ||||      ||  |||||||||||||||||||| |||||||| || ||   |||| | |||||||| ||||  ||  | |   |         ||||||   ||    |  ||   |   ||| |||    ||  ||  || |                                       
GCAAGCGCGGCGGCGCGGCGGGGCAGAAGCAGCCCGTGCACCACCGCAAGTCCATCGACACGTTCGGGCAGAGGACGTCGCAGTACCGCGGCGTGACGAGgtacgtacgtacacgccgccgtgtcgagctagttgactggtccgtccgcccgtccgtccatggagctgaagctgaagttgaaactaaaactaaaactgaaagtaattaagcag