1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTATTATAAGTCCCGGCAAGAATTTGCCGAGTTTTACAAGAGCGCCCTGCTGTACTTGGCGTATACATCTGTGGAGACTCTGTCAGAAGACTTCAAGCTGgttcgtttcttcgttatcttattacttttcgactggttgcgtaatttatgctatgctctcctgactgttcagtgaagcaaatcagttgtcgactgaaaca...
species | Physcomitrella patens |
transcript | PP1S66_117V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTACTTGGCGTATACATCTGTGGAGACTCTGTCAGAAGACTTTCA-GCTG GATCTTGCATTTGATCTTTCACTEST: gi|162195600|gb|FC371901.1|FC371901
genomic: GTACTTGGCGTATACATCTGTGGAGACTCTGTCAGAAGACTT-CAAGCTGgttcgtttct ... atggttgcagGATCTTGCATTTGATCTTTCACT
EST: TGTCAGAAGACTTCAAGCTG GATCTTGCATTTGATCTTTCACTGGCGGCC-TGTTGGGGGACAACATCTATEST: gi|162195601|gb|FC371902.1|FC371902
genomic: TGTCAGAAGACTTCAAGCTGgttcgtttct ... atggttgcagGATCTTGCATTTGATCTTTCACTGGCGGCCTTGTTGGGGGACAACATCTAT
EST: GTACTTGGCGTATACATCTGTGGAGACTCTGTCAGAAGACTTTCA-GCTG GATCTTGCATTTGATCTTTCACTGGCEST: gi|18340009|gb|BJ172037.1|BJ172037
genomic: GTACTTGGCGTATACATCTGTGGAGACTCTGTCAGAAGACTT-CAAGCTGgttcgtttct ... atggttgcagGATCTTGCATTTGATCTTTCACTGGC
EST: GACTTCAAGCTG GATCTTGCATTTGATCTTTCACTGGCGGCCTTGTTGGGGGACAACATCTAT
genomic: GACTTCAAGCTGgttcgtttct ... atggttgcagGATCTTGCATTTGATCTTTCACTGGCGGCCTTGTTGGGGGACAACATCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTATAAGTCCCGGCAAGAATTTGCCGAGTTTTACAAGAGCGCCCTGCTGTACTTGGCGTATACATCTGTGGAGACTCTGTCAGAAGACTTCAAGCTGgttcgtttcttcgttatcttattacttttcgactggttgcgtaatttatgctatgctctcctgactgttcagtgaagcaaatcagttgtcgactgaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG