1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TACGCCTATCGCATATGACCGTGCAGCTCCTTCTCATTCAACTCCACAAATAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgtcaacatacaccaacgttgattgtgtgttcatccctgtgtcttcttttgagggttttctggacgggggctattttctattcattacaagaaaatctgattatgtgttaagcttcacttatttgatacgttttatattaaacgtgtcacttgtgtgcactcag
species | Physcomitrella patens |
transcript | PP1S65_2V6.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG CCTCCAAATGTACATGGTCGGAAGAEST: gi|100388923|gb|BY988799.1|BY988799
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGA
EST: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG CCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTATEST: gi|100364396|gb|BY984591.1|BY984591
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
EST: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG CCTCCCAATGTACATGGTCGGAAGAAGGGTGTTTTAGTTGGCATCAATTATEST: gi|67507918|gb|BJ940793.1|BJ940793
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
EST: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG CCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTATEST: gi|100413675|gb|BY974934.1|BY974934
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
EST: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG CCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTATEST: gi|67569388|gb|BJ942212.1|BJ942212
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
EST: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACG CCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
genomic: TAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgt ... gtgcactcagCCTCCAAATGTACATGGTCGGAAGAAGGCTGTTTTAGTTGGCATCAATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGCCTATCGCATATGACCGTGCAGCTCCTTCTCATTCAACTCCACAAATAAGTGATCCTTACAGAAACTCTTCACATGCTCCTCAGTATACACCAACGgtatgcctgtcaacatacaccaacgttgattgtgtgttcatccctgtgtcttcttttgagggttttctggacgggggctattttctattcattacaagaaaatctgattatgtgttaagcttcacttatttgatacgttttatattaaacgtgtcacttgtgtgcactcag
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