1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGTACCAACTGTCGATACAGGCGGCGTGCGGGCTGTCGTGGCCGCAGGACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGGgtagaggaacttgtgctagagctgagtgtatttggtggggtggtaggagggtgggtgaaggtgaaagtggggagggattgtttgcagtgcgtgaaggcacgggagggttttctgagtgtatgtgtgtgtgtgtggtccag
species | Physcomitrella patens |
transcript | PP1S65_194V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGG GAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATAEST: gi|100448737|gb|CJ973036.1|CJ973036
genomic: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGGgtagaggaac ... tgtggtccagGAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATA
EST: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCATACTACCAGG GAGCTGGTGCAAGTANAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATAEST: gi|100387749|gb|BY951749.1|BY951749
genomic: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGGgtagaggaac ... tgtggtccagGAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATA
EST: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGG GAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGGGCAAGGGGATCAACATAEST: gi|100390843|gb|BY989326.1|BY989326
genomic: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGGgtagaggaac ... tgtggtccagGAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATA
EST: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGG GAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATAEST: gi|100450218|gb|CJ974153.1|CJ974153
genomic: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGGgtagaggaac ... tgtggtccagGAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATA
EST: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGG GAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATAEST: gi|100432630|gb|BY978670.1|BY978670
genomic: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGGgtagaggaac ... tgtggtccagGAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATA
EST: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGG GAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATAEST: gi|100376967|gb|BY949553.1|BY949553
genomic: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGGgtagaggaac ... tgtggtccagGAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATA
EST: CGGATGATCATTTCA-GTGCTGGACGACTCGACGGATCAGACTACCCAGG -AGCTGGTGCAAGTAAGA-GTGCAGCGGTGGGCGA-CAAGGGGATCEST: gi|100392974|gb|BY989700.1|BY989700
genomic: CGGATGATCATT-CAAGTGCTGGACGACTCGACGGATCAGACTACC-AGGgtagaggaac ... tgtggtccagGAGCTGGTGCAAGTA-GAAGTGCAGCGGTGGGCGAGCAAGGGGATC
EST: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGG GAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATA
genomic: ACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGGgtagaggaac ... tgtggtccagGAGCTGGTGCAAGTAGAAGTGCAGCGGTGGGCGAGCAAGGGGATCAACATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTACCAACTGTCGATACAGGCGGCGTGCGGGCTGTCGTGGCCGCAGGACCGGATGATCATTCAAGTGCTGGACGACTCGACGGATCAGACTACCAGGgtagaggaacttgtgctagagctgagtgtatttggtggggtggtaggagggtgggtgaaggtgaaagtggggagggattgtttgcagtgcgtgaaggcacgggagggttttctgagtgtatgtgtgtgtgtgtggtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA