1 5' 3' | 2 5' 3' | 3 5' 3' |
CACTTCGTTCTGCACCGCTGCGAACTCAATTTCCCAGCTTTATACACAAGCTCAGAATCAGCAGAAGCTTTCTTTTCAAGCAGGCGAAAGACATGCAGTGgtaagcatgtcaataacgcgagcgtgaattgtttttgtctcgcatgtctgtgggtttctcttattgtgtgctttatcggatgattcggctttcgaatgac...
species | Physcomitrella patens |
transcript | PP1S63_97V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCAGAATCAGCAGAAGCTTTCTTTTCAAGCAGGCGAAAGACATGCAGTG GAGAAGCTGTACTACTGGTTGCTGAGGGAACACCAAAATGGTTCCAATATTEST: gi|162246085|gb|FC423573.1|FC423573
genomic: CTCAGAATCAGCAGAAGCTTTCTTTTCAAGCAGGCGAAAGACATGCAGTGgtaagcatgt ... tgcggaacagGAGAAGCTGTACTACTGGTTGCTGAGGGAACACCAAAATGGTTCCAATATT
EST: CTCAGAATCAGCAGAAGCTCTCTTTTCAAGCAGGCGAAAGACATGCAGTG GAGAAGCTGTACTACTGGTTGCTGAGGGAACACCAAAATGGTTCCAATATT
genomic: CTCAGAATCAGCAGAAGCTTTCTTTTCAAGCAGGCGAAAGACATGCAGTGgtaagcatgt ... tgcggaacagGAGAAGCTGTACTACTGGTTGCTGAGGGAACACCAAAATGGTTCCAATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTTCGTTCTGCACCGCTGCGAACTCAATTTCCCAGCTTTATACACAAGCTCAGAATCAGCAGAAGCTTTCTTTTCAAGCAGGCGAAAGACATGCAGTGgtaagcatgtcaataacgcgagcgtgaattgtttttgtctcgcatgtctgtgggtttctcttattgtgtgctttatcggatgattcggctttcgaatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC