1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CATGGCAAGGAAGAAGATCAGAGAGTATAACTCAAAACGCATCTTCAAGGAGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctggctgttaaggttaatcatatctctaactgcatacttactagtcaatgcgcatcagctgatgagcatttctaactatgtttcatcaaaatatgtccatgttgccttagtgttatgttaatgccttgtcaggagtgagtattaaagtggtttctgtttcttgcttgaaaatccag
species | Physcomitrella patens |
transcript | PP1S63_54V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|208363504|gb|DC935269.1|DC935269
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|100356137|gb|BY946215.1|BY946215
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|100401167|gb|BY990864.1|BY990864
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|18330798|gb|BJ162804.1|BJ162804
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: CACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|18328338|gb|BJ160342.1|BJ160342
genomic: CACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|208376362|gb|DC932272.1|DC932272
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|162235868|gb|FC412419.1|FC412419
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|18346689|gb|BJ178734.1|BJ178734
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|162219070|gb|FC394653.1|FC394653
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|100426836|gb|BY977387.1|BY977387
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTTEST: gi|100402496|gb|BY954865.1|BY954865
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
EST: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAG GTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
genomic: AGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctg ... gaaaatccagGTAACACAATCAACAGATTTCAACGAGTTGGCAAACAAGGAAGCATGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGCAAGGAAGAAGATCAGAGAGTATAACTCAAAACGCATCTTCAAGGAGCACTTGAAGAGGCTAGCAGGCATTGATGTTGATATCAAGGCTGCGCAGgtatgttctggctgttaaggttaatcatatctctaactgcatacttactagtcaatgcgcatcagctgatgagcatttctaactatgtttcatcaaaatatgtccatgttgccttagtgttatgttaatgccttgtcaggagtgagtattaaagtggtttctgtttcttgcttgaaaatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG