1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AAGATGATGCAAACGCGGAAGGACATTTTGGAAATCGACAGGGAGAGTGTGATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtacttcacgacttcacattttcctagtagacgctgcttggactttgcaaggatttggcgtgctacgccttaccatgtggtgattcggactctgtc...
species | Physcomitrella patens |
transcript | PP1S60_139V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAG GGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCAEST: gi|18373830|gb|BJ205408.1|BJ205408
genomic: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtactt ... ttgttgacagGGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCA
EST: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAG GGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCAEST: gi|100404207|gb|BY955309.1|BY955309
genomic: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtactt ... ttgttgacagGGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCA
EST: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAG GGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCAEST: gi|18374527|gb|BJ206105.1|BJ206105
genomic: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtactt ... ttgttgacagGGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCA
EST: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAG GGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCAEST: gi|18365192|gb|BJ197266.1|BJ197266
genomic: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtactt ... ttgttgacagGGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCA
EST: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAG GGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCAEST: gi|18374502|gb|BJ206080.1|BJ206080
genomic: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtactt ... ttgttgacagGGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCA
EST: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAG GGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCAEST: gi|100387548|gb|BY988419.1|BY988419
genomic: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtactt ... ttgttgacagGGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCA
EST: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAG GGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCAEST: gi|100401308|gb|BY990937.1|BY990937
genomic: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtactt ... ttgttgacagGGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCA
EST: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACCCCATCTGCTAG GGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCA
genomic: GATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtactt ... ttgttgacagGGCCAGATGAGAGGACGGAGTTCAGAATTCTGTGCAGACGAGTTGAATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATGATGCAAACGCGGAAGGACATTTTGGAAATCGACAGGGAGAGTGTGATTGTCATCTCCAAGACGAAGCTCACAGATGGCTTACTCCATCTGCTAGgtgcgtacttcacgacttcacattttcctagtagacgctgcttggactttgcaaggatttggcgtgctacgccttaccatgtggtgattcggactctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG