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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGGATGTGATGCTGGGAACCCGGGAGTCAGCATCCTTCGTTTTGCACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAGgtcagttaattttacctcaaatcacctgcatctcagctacatgtggtttgtaattctgttattctgaggtgcgaggacaaattagtattagatactggct...

Basic information

species Physcomitrella patens
transcript PP1S5_248V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22132594|gb|BQ827244.1|BQ827244
EST:     ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAG                         GTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
genomic: ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAGgtcagttaat ... tttgtagcagGTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
EST: gi|162229579|gb|FC404860.1|FC404860
EST:     ACAGAAGGCNGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAG                         GTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
genomic: ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAGgtcagttaat ... tttgtagcagGTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
EST: gi|67696673|gb|BJ956906.1|BJ956906
EST:     ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAG                         GTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
genomic: ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAGgtcagttaat ... tttgtagcagGTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
EST: gi|162229580|gb|FC404861.1|FC404861
EST:     ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAG                         GTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
genomic: ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAGgtcagttaat ... tttgtagcagGTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
EST: gi|162224698|gb|FC401946.1|FC401946
EST:     ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAG                         GTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
genomic: ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAGgtcagttaat ... tttgtagcagGTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
EST: gi|162224697|gb|FC401945.1|FC401945
EST:     ACAGAAGGCNGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAG                         GTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
genomic: ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAGgtcagttaat ... tttgtagcagGTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
EST: gi|67701119|gb|BJ961352.1|BJ961352
EST:     ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAG                         GTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
genomic: ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAGgtcagttaat ... tttgtagcagGTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
EST: gi|67692877|gb|BJ953110.1|BJ953110
EST:     ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAG                         GTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT
genomic: ACAGAAGGCTGGCGTCGCTTTGGCGCTTGGTCTCTCGCTCTCGTTAGGAGgtcagttaat ... tttgtagcagGTGTCGACATGGCGGAGGCCAAGAGGCTCGAAGGCGTGAACAAACCGGAGT