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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGGAACGGCCGTAAGTGCCAAGCCAATTGTGATGCGAGCGGAGTATGCATTTTGTCCCAATCTCACGATCATTGACACACCTGGCTTTGTGCTTAAGgttagctcgaatatccattttgcttgtttccaaagagtcatatgtctaatttacacgtgttattcttcattctcttcagaacccgtccctctgtgtactg...

Basic information

species Physcomitrella patens
transcript PP1S5_205V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S5_205V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 2
ACTGGGAACGGCCGTAAGTGCCAAGCCAATTGTGATGCGAGCGGAGTATGCATTTTGTCCCAATCTCACGATCATTGACACACCTGGCTTTGTGCTTAAGgttagctcgaatatccattttgcttgtttccaaagagtcatatgtctaatttacacgtgttattcttcattctcttcagaacccgtccctctgtgtactg
|      || || ||   | | ||||||||||| ||| |||| |||||||||  |||||| || || || || |||||||||||||| ||||| |||||||| ||    |   |  | |||            | | | |  | |   |||||  | || |    |  ||||   |   |||   |       || |   
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgag----agcttgaaatttat---------gacaattaggtttggcatttatgcttgctggattgtattca--tggaaacttatttggtactgcag--

upper sequence: PP1S5_205V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA06G36650.1 (Glycine max), 5'ss of exon 2
ACTGGGAACGGCCGTAAGTGCCAAGCCAATTGTGATGCGAGCGGAGTATGCATTTTGTCCCAATCTCACGATCATTGACACACCTGGCTTTGTGCTTAAGgttagctcgaatatccattttgcttgtttccaaagagtcatatgtctaatttacacgtgttattcttcattctcttcagaacccgtccctctgtgtactg
|      || || ||   | | ||||||||||| ||| |||| |||||||||  |||||| || || || || |||||||||||||| ||||| |||||||| ||      ||    || ||     |   ||    |  | || |  ||||   | || |    |  ||||   |   ||| | |       || |   
AACCAAGACAGCAGTTTCTCCTAAGCCAATTGTAATGAGAGCTGAGTATGCACATTGTCCTAACCTTACTATTATTGACACACCTGGGTTTGTTCTTAAGgtgagagtttgtaat--ttatgacaagtgataagtgttggtttggc--atttgtgcttgctggattgtattca--tggaaactcatttggtactgcag--

upper sequence: PP1S5_205V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ36651 (Selaginella moellendorffii), 5'ss of exon 2
ACTGGGAACGGCCGTAAGTGCCAAGCCAATTGTGATGCGAGCGGAGTATGCATTTTGTCCCAATCTCACGATCATTGACACACCTGGCTTTGTGCTTAAGgttagctcgaatatccatt-ttgcttgtttccaaag--agtcatatgtctaatttacacgtgttattcttcattctcttcagaacccgtccctctgtgtactg
  |  |  |||| || ||  ||||||||||||||||||| | ||||||||| | ||||||||||||||| ||||| || ||||| || ||| | || ||||| ||| |   || | | | || || ||   |      |  ||| | |||| ||| ||  ||  |                                      
GATCCGCGCGGCAGTCAGCTCCAAGCCAATTGTGATGCGTGTGGAGTATGCGTATTGTCCCAATCTCACCATCATCGATACACCGGGTTTTATACTCAAGgt-agcgcttctaactagtgttactagtcctccgttttatacatttttctacttttcatatggcag-------------------------------------

upper sequence: PP1S5_205V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: EFJ18064 (Selaginella moellendorffii), 5'ss of exon 2
ACTGGGAACGGCCGTAAGTGCCAAGCCAATTGTGATGCGAGCGGAGTATGCATTTTGTCCCAATCTCACGATCATTGACACACCTGGCTTTGTGCTTAAGgttagctcgaatatccatt-ttgcttgtttccaaag--agtcatatgtctaatttacacgtgttattcttcattctcttcagaacccgtccctctgtgtactg
  |  |  |||| || ||  ||||||||||||||||||| | ||||||||| | ||||||||||||||| ||||| || ||||| || ||| | || ||||| ||| |   || | | | || || ||   |      |  ||| | |||| ||| ||  ||  |                                      
GATCCGTGCGGCAGTCAGCTCCAAGCCAATTGTGATGCGTGTGGAGTATGCGTATTGTCCCAATCTCACCATCATCGATACACCGGGTTTTATTCTCAAGgt-agcgcttctaactagtgttactagtcctccgttttatacatttttctacttttcatatggcag-------------------------------------