Sequence
atgc intronic sequence ATGC exonic sequenceTCGATCACCTCATATCACAGAGTATTATGGGTCGTACTTACACACGACAAAATTATGGATTGTCATGGAGTACATGGCTGGTGGCTCTGTATCAGACTTGgtaaatctaacagcacactttgactttgttttccagttggggtatgaaactgtttttgtgcttttgcgttattgaatcagttgataatttacctctgaca...
Basic information
species | Physcomitrella patens |
transcript | PP1S59_173V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S59_173V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ32910 (Selaginella moellendorffii), 5'ss of exon 4
TCGATCACCTCATATCACAGAGTATTATGGGTCGTACTTACACACGACAAAATTATGGATTGTCATGGAGTACATGGCTGGTGGCTCTGTATCAGACTTGgtaaatctaacagcacactttgactttgttttccagttggggtatgaaactgtttttgtgcttttgcgttattgaatcagttgataatttacctctgaca
|| ||||| | || || ||||||||||| || | | | || |||||||||||||| || |||||||||||||||||||| |||||||| |||||||| | | | | || | | | || ||| | | | |||||| | | |
CCGGTCACCATACATTACGGAGTATTATGGATCTTTCCTGCATGGAACAAAATTATGGATCGTTATGGAGTACATGGCTGGTGGATCTGTATCGGACTTGgtgagtttggctgc----------tgtttagtctagt---gacgaaagattgttttctggatacag----------------------------------
upper sequence: PP1S59_173V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ15774 (Selaginella moellendorffii), 5'ss of exon 4
TCGATCACCTCATATCACAGAGTATTATGGGTCGTACTTACACACGACAAAATTATGGATTGTCATGGAGTACATGGCTGGTGGCTCTGTATCAGACTTGgtaaatctaacagcacactttgactttgttttccagttggggtatgaaactgtttttgtgcttttgcgttattgaatcagttgataatttacctctgaca
|||||||| | || || ||||||||||| || | | | || |||||||||||||| || |||||||||||||||||||| |||||||| |||||||| | | | || | | | || ||| | | | || ||| | | |
CCGATCACCATACATTACGGAGTATTATGGATCTTTCCTGCATGGAACAAAATTATGGATCGTTATGGAGTACATGGCTGGTGGATCTGTATCGGACTTGgtgagttaggctgc----------tgtttagtctagt---gacgaaagattgctttctggatgcag----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100383755|gb|BY969284.1|BY969284EST: AATTATGGATTGTCATGGAGTACATGGCTGGCGGCTCTGTATCAGACTTG CTTGAGACTGGACCACCACTTGATGAAGTTTCTATAGCGTCCATCTTACGA
genomic: AATTATGGATTGTCATGGAGTACATGGCTGGTGGCTCTGTATCAGACTTGgtaaatctaa ... gttgacgcagCTTGAGACTGGACCACCACTTGATGAAGTTTCTATAGCGTCCATCTTACGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCGATCACCTCATATCACAGAGTATTATGGGTCGTACTTACACACGACAAAATTATGGATTGTCATGGAGTACATGGCTGGTGGCTCTGTATCAGACTTGgtaaatctaacagcacactttgactttgttttccagttggggtatgaaactgtttttgtgcttttgcgttattgaatcagttgataatttacctctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG