1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGTTGTGCAGAGAGGGGAATTAGGCGGTCTATGGAAGATGCACATGTGTGTGTGGATAACTTGGAGGAAACTTTGGGTACTCGAGGTGCCTTCTACGGGgtaaatatctgcgttataaatgtgaattatatactgaccatgaaggctctttagatatttacattgtaataatgctgatggaacttgaccgttttagccttttttgctttcctgagtatatgcacatcaactgaaatgtggtatgaagttttgggactgaattggtgttgtgggtaattcattttcag
species | Physcomitrella patens |
transcript | PP1S59_140V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTCGAGGTGCCTTCTACGGG GTCTTTGACGGTCATGATGGTGAAGCTGCGGCATGTTACGTTAAAGAGCATEST: gi|162200911|gb|FC377314.1|FC377314
genomic: ACTCGAGGTGCCTTCTACGGGgtaaatatct ... tcattttcagGTCTTTGACGGTCATGATGGTGAAGCTGCGGCATGTTACGTTAAAGAGCAT
EST: GTGTGGATAACTTGGAGGAAACTTTGGGTACTCGAGGTGCCTTCTACGGG GTCTTTGACGGTCATGATGGTGAAGCTGCGGCATGTTACGTTAAAGAGCAT
genomic: GTGTGGATAACTTGGAGGAAACTTTGGGTACTCGAGGTGCCTTCTACGGGgtaaatatct ... tcattttcagGTCTTTGACGGTCATGATGGTGAAGCTGCGGCATGTTACGTTAAAGAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTTGTGCAGAGAGGGGAATTAGGCGGTCTATGGAAGATGCACATGTGTGTGTGGATAACTTGGAGGAAACTTTGGGTACTCGAGGTGCCTTCTACGGGgtaaatatctgcgttataaatgtgaattatatactgaccatgaaggctctttagatatttacattgtaataatgctgatggaacttgaccgttttagccttttttgctttcctgagtatatgcacatcaactgaaatgtggtatgaagttttgggactgaattggtgttgtgggtaattcattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA