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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGACTGGCCTTGACGTCGTTGTCTTTGGCAAGCCTTCCGTGATTGGTGCCGTGCAGGGAATGATCACGGGTCTTGTCGTCATCACCCCCGGTGCAGgtaaaacttatgtatattcttattcatagtgtttttcaaacatgcattctttacaggaactgagttgagctttggatcaaacggacgcacctttgaaacttttgttttgaaaatgtgtgcgcttgcag

Basic information

species Physcomitrella patens
transcript PP1S57_114V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S57_114V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G335218_T01 (Zea mays), 5'ss of exon 1
GTGTGGACTGGCCTTGACGTCGTTGTCTTTGGCAAGCCTTCCGTGATTGGTGCCGTGCAGGGAATGATCACGGGTCTTGTCGTCATCACCCCCGGTGCAGgtaaaacttatgtatattcttattcatagtgtttttcaaacatgcattctttacaggaactgagttgagctttggatcaaacggacgcacctttgaaacttttgttttgaaaatgtgtgcgcttgcag
|| |||||  |||| |||||| |  ||||    ||||| ||||| || || ||||| ||||| |||||||||||||| |||  |||||| ||||| ||||||| |    || || |   || |   ||   |   |     |  |      | |  |  |     |||    ||| ||     |                                            
GTCTGGACCTGCCTCGACGTCATCTTCTTCAAGAAGCCCTCCGTCATCGGCGCCGTCCAGGGCATGATCACGGGTCTCGTCTGCATCACTCCCGGCGCAGgtacagtacatatacacgattctgtctacaatcactactctactctactactgccagtgccagcctga-tgatggttcttgtag--------------------------------------------