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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGAACGATTACAGAAAGGGGTACTTTAACAACTTGTCCTATGAGGAAGTGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcggagcaatgttaacctcatagccctcgcagaaaatctaagagggatgaagcaaaatgatttcatcttacattgtatgtgtggtagcgacga...

Basic information

species Physcomitrella patens
transcript PP1S570_2V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162276745|gb|FC452739.1|FC452739
EST:     TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAA                         AATCTGTACGAAAGCGGTGCAAGGAAATTCCTCGTGTTCAATATACCCTCA
genomic: TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcg ... ggcgctgcagAATCTGTACGAAAGCGGTGCAAGGAAATTCCTCGTGTTCAATATACCCTCA
EST: gi|162250356|gb|FC426010.1|FC426010
EST:     TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAA                         AATCTATACGAAAGCGGTGCAAGGAAATTCCTCGT
genomic: TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcg ... ggcgctgcagAATCTGTACGAAAGCGGTGCAAGGAAATTCCTCGT
EST: gi|67718840|gb|BJ969099.1|BJ969099
EST:     TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAA                         AATCTGTACGAAAGCGGTGCAAGGAA
genomic: TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcg ... ggcgctgcagAATCTGTACGAAAGCGGTGCAAGGAA
EST: gi|208400675|gb|DC908972.1|DC908972
EST:     TGGCGAAGAATATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAA                         AATCTGTACGAAAGCGGTGCAAGGAA-TTCCTCGTGTTCA-TATACCCTCA
genomic: TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcg ... ggcgctgcagAATCTGTACGAAAGCGGTGCAAGGAAATTCCTCGTGTTCAATATACCCTCA
EST: gi|162219516|gb|FC396474.1|FC396474
EST:     TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAA                         AATCTATACGAAAGCGGTGCAAGGAAATTCCTCGTGTTCAATATACCCTCA
genomic: TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcg ... ggcgctgcagAATCTGTACGAAAGCGGTGCAAGGAAATTCCTCGTGTTCAATATACCCTCA
EST: gi|162237169|gb|FC413536.1|FC413536
EST:     TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAA                         AATCTATACGAAAGCGGTGCA
genomic: TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcg ... ggcgctgcagAATCTGTACGAAAGCGGTGCA
EST: gi|208353688|gb|DC938755.1|DC938755
EST:     TGGCGAAGANTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAA                         AATCTGTACGAAAGCGGTGCAAGGAA
genomic: TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcg ... ggcgctgcagAATCTGTACGAAAGCGGTGCAAGGAA
EST: gi|37850845|gb|BJ608853.1|BJ608853
EST:     GAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGTTAGAA                         AATCTGTACGAAAGCGGTGCAAGGAAATTCNTNGTGTTCAATATACCNTCA
genomic: GAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcg ... ggcgctgcagAATCTGTACGAAAGCGGTGCAAGGAAATTCCTCGTGTTCAATATACCCTCA
EST: gi|162233600|gb|FC409359.1|FC409359
EST:     TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAA                         AATCTATACGAAAGCGGTGCAAGGAAATTCCTCGTNGT-CAATATACCCTC
genomic: TGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcg ... ggcgctgcagAATCTGTACGAAAGCGGTGCAAGGAAATTCCTCGT-GTTCAATATACCCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGAACGATTACAGAAAGGGGTACTTTAACAACTTGTCCTATGAGGAAGTGGCGAAGAGTATACCCGACGTTGTTGGTAACATCACCTTGGCGCTAGAAgtaagtctcggagcaatgttaacctcatagccctcgcagaaaatctaagagggatgaagcaaaatgatttcatcttacattgtatgtgtggtagcgacga

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