Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGCTCTGCTATCAGCACCATCACTGCCCGGTATCCTCACATCAAGGGGATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacctataaacccctcgaattgaagccacatatcttgccgatagactgaattgcaacactgcctaactcatttgcatttgcgttaagttaattt...

Basic information

species Physcomitrella patens
transcript PP1S56_71V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176424|gb|FC353817.1|FC353817
EST:     GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAG                         GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
genomic: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
EST: gi|162153286|gb|FC329068.1|FC329068
EST:     GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAG                         GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
genomic: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
EST: gi|162244129|gb|FC419806.1|FC419806
EST:     GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAG                         GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
genomic: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
EST: gi|162172204|gb|FC348769.1|FC348769
EST:     GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAG                         GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
genomic: GATCAACTTCGATCAACCTCATGTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
EST: gi|37843068|gb|BJ601076.1|BJ601076
EST:     GTAATCAAAGCTTGCCCTGAATTGCCAG                         GAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG
genomic: GTAATCAAAGCTTGCCCTGAATTGCCAGgtgagaaacc ... tttctgtcagGAGTGGAGCACATGAGTGGAGACATGTTTGAGTCCATCCCATCTGGAGGCG