1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGGTTCGGGAACCCTAACTGTGGTGGACAACAGGACAGGGAAAAAGTATGAGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAGgttatatggtgctcttattgggaattcattttattaatgaactacatctgtaattggtgatggacgtagcgcatggtgtttgccacattatgttccttgtttgatatttctatatacgtaactctaaactaaactaaaatcgagtggttgtgtaaggaaattgcag
species | Physcomitrella patens |
transcript | PP1S56_241V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAG ATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATATEST: gi|18346071|gb|BJ178114.1|BJ178114
genomic: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAGgttatatggt ... gaaattgcagATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATAT
EST: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAG ATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATATEST: gi|162165546|gb|FC340657.1|FC340657
genomic: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAGgttatatggt ... gaaattgcagATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATAT
EST: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAG ATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATATEST: gi|18342935|gb|BJ174971.1|BJ174971
genomic: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAGgttatatggt ... gaaattgcagATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATAT
EST: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAG ATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATATEST: gi|18352077|gb|BJ184130.1|BJ184130
genomic: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAGgttatatggt ... gaaattgcagATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATAT
EST: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAG ATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATAT
genomic: AGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAGgttatatggt ... gaaattgcagATAGTTGCTGGTGGAGATGGACAGGGCCTCAGAGTATTTGATCCTGGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTTCGGGAACCCTAACTGTGGTGGACAACAGGACAGGGAAAAAGTATGAGTTCGAGATCAGCGAAGGCGGGACATTGAAAGCCACGGACTTCCAGAAGgttatatggtgctcttattgggaattcattttattaatgaactacatctgtaattggtgatggacgtagcgcatggtgtttgccacattatgttccttgtttgatatttctatatacgtaactctaaactaaactaaaatcgagtggttgtgtaaggaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA