Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGAAAGACGACTTCACCACCATCAATGCTGCTCTAGACTCCATAGCCGAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttataaccattctctccaatcccagaacgaaatctgagttgtatgcgttactagctcattcaatatgcacaggcatgcactcatgcgtttgaaacttcag

Basic information

species Physcomitrella patens
transcript PP1S55_167V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100433131|gb|BY978826.1|BY978826
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208349092|gb|DC909875.1|DC909875
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100371197|gb|BY985986.1|BY985986
EST:     GAGCACGAAAAGCACCGCATCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGCGTCGAAACCATACATCACGTTCCGGGGGCG
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGG-CG
EST: gi|208345559|gb|DC909249.1|DC909249
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100400403|gb|BY954459.1|BY954459
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100372137|gb|BY967723.1|BY967723
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208348370|gb|DC905556.1|DC905556
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100428241|gb|BY977704.1|BY977704
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100445957|gb|CJ970256.1|CJ970256
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100422855|gb|BY958034.1|BY958034
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCCGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100373167|gb|BY949242.1|BY949242
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100383977|gb|BY987234.1|BY987234
EST:     AGCACGAAAAGCACCCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCA
genomic: AGCACGAAAAGCACC-GCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCA
EST: gi|100367246|gb|BY984857.1|BY984857
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100394358|gb|BY972029.1|BY972029
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208348321|gb|DC905535.1|DC905535
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100385441|gb|BY969778.1|BY969778
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100388354|gb|BY951956.1|BY951956
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100441677|gb|BY962768.1|BY962768
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208346761|gb|DC913042.1|DC913042
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208347235|gb|DC909682.1|DC909682
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACNA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208347552|gb|DC912825.1|DC912825
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100385841|gb|BY951035.1|BY951035
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100387098|gb|BY951497.1|BY951497
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCTGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100450653|gb|CJ974371.1|CJ974371
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208345507|gb|DC909197.1|DC909197
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100386122|gb|BY970061.1|BY970061
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100385872|gb|BY951066.1|BY951066
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100405967|gb|BY991473.1|BY991473
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100390736|gb|BY971491.1|BY971491
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100354895|gb|BY983620.1|BY983620
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208344844|gb|DC912678.1|DC912678
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100398019|gb|BY954047.1|BY954047
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100437088|gb|BY961345.1|BY961345
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100366092|gb|BY967275.1|BY967275
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100388851|gb|BY988727.1|BY988727
EST:     AGCACGAANAGCACCGCACCGTGATACACATCCGGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: AGCACGAAAAGCACCGCACCGTGATACACATCCGGG-AGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100436993|gb|BY979629.1|BY979629
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCAT
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCAT
EST: gi|100383890|gb|BY987147.1|BY987147
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGCCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100393768|gb|BY953504.1|BY953504
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208380464|gb|DC914888.1|DC914888
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208392309|gb|DC907856.1|DC907856
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100359278|gb|BY965668.1|BY965668
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100360178|gb|BY966059.1|BY966059
EST:     AGCACGAAAAGCACCGCACCGTGATACACATCCCGGGAGGGCATCTACGA                         GGGAGAAGATAGTCATCAACGATGTCGAACCC-TACATCACGTTCCGGGGG
genomic: AGCACGAAAAGCACCGCACCGTGATACACATCC-GGGAGGGCATCTACGAgtaagttata ... gaaacttcagGG-AGAAGATAGTCATCAACG-TGTCGAAACCATACATCACGTTCCGGGG-