Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGAAAGACGACTTCACCACCATCAATGCTGCTCTAGACTCCATAGCCGAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttataaccattctctccaatcccagaacgaaatctgagttgtatgcgttactagctcattcaatatgcacaggcatgcactcatgcgtttgaaacttcag

Basic information

species Physcomitrella patens
transcript PP1S55_167V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208344844|gb|DC912678.1|DC912678
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100428241|gb|BY977704.1|BY977704
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100445957|gb|CJ970256.1|CJ970256
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208392309|gb|DC907856.1|DC907856
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100387098|gb|BY951497.1|BY951497
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCTGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100385841|gb|BY951035.1|BY951035
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100381264|gb|BY950053.1|BY950053
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGGCG
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGG-CG
EST: gi|100388354|gb|BY951956.1|BY951956
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208345507|gb|DC909197.1|DC909197
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100398019|gb|BY954047.1|BY954047
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100385872|gb|BY951066.1|BY951066
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100385441|gb|BY969778.1|BY969778
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208345559|gb|DC909249.1|DC909249
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|208348321|gb|DC905535.1|DC905535
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100373167|gb|BY949242.1|BY949242
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100405967|gb|BY991473.1|BY991473
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
EST: gi|100400403|gb|BY954459.1|BY954459
EST:     GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGA                         GGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA
genomic: GAGCACGAAAAGCACCGCACCGTGATACACATCCGGGAGGGCATCTACGAgtaagttata ... gaaacttcagGGAGAAGATAGTCATCAACGTGTCGAAACCATACATCACGTTCCGGGGCGA