1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTAAAGAACCTGTACTTAGGAAAAGACCACGTAGGAGATGCTCCACTGTTGAAGAAGATTGCTGCTGGTCTTACGACAGgttgtcatagtttttctcctcacgttatgcccttcagaattgtcatcttaaatggcatatttttgcttttcttaaataaattcagtttcaataatattcctatcttgcctctttttctttttgatcttttgatcaccttgtgcttgtttctagagaggagttttgatgctgttttatgcatgggatgaactccag
species | Physcomitrella patens |
transcript | PP1S54_186V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGTAGGAGATGCTCCACTGTTGAAGAAGATTGCTGCTGGTCTTACGACAG GTGCGTTGGGCATTTGTGTGGCGAGTCCCACGGATCTAGTGAAAGTGCGACEST: gi|100428683|gb|BY959381.1|BY959381
genomic: CGTAGGAGATGCTCCACTGTTGAAGAAGATTGCTGCTGGTCTTACGACAGgttgtcatag ... tgaactccagGTGCGTTGGGCATTTGTGTGGCGAGTCCCACGGATCTAGTGAAAGTGCGAC
EST: CGTAGGAGATGCTCCACTGTTGAAGAAGATTGCTGCTGGTCTTACGACAG GTGCGTTGGGCATTTGTGTGGCGAGTCCCACGGATCTAGTGAAAGTGCGACEST: gi|162272364|gb|FC449029.1|FC449029
genomic: CGTAGGAGATGCTCCACTGTTGAAGAAGATTGCTGCTGGTCTTACGACAGgttgtcatag ... tgaactccagGTGCGTTGGGCATTTGTGTGGCGAGTCCCACGGATCTAGTGAAAGTGCGAC
EST: CGTAGGAGATGCTCCACTGTTGAAGAAGATTGCTGCTGGTCTTACGACAG GTGCGTTGGGCATTTGTGTGGCGAGTCCCACGGATCTAGTGAAAGTGCGAC
genomic: CGTAGGAGATGCTCCACTGTTGAAGAAGATTGCTGCTGGTCTTACGACAGgttgtcatag ... tgaactccagGTGCGTTGGGCATTTGTGTGGCGAGTCCCACGGATCTAGTGAAAGTGCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAAGAACCTGTACTTAGGAAAAGACCACGTAGGAGATGCTCCACTGTTGAAGAAGATTGCTGCTGGTCTTACGACAGgttgtcatagtttttctcctcacgttatgcccttcagaattgtcatcttaaatggcatatttttgcttttcttaaataaattcagtttcaataatattcctatcttgcctctttttctttttgatcttttgatcaccttgtgcttgtttctagagaggagttttgatgctgttttatgcatgggatgaactccag
- - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT