1 5' 3' | 2 5' 3' | 3 5' 3' |
GATGAGCCCACCATAGAGGACGCCAAGGACGACGACGACGATGAAGACGATGATGACGACGAGTTTGACGCCCTTGATGGAGACGATGGTCATGGCGAAGgtcctttccatcaaatccccttcccatacttttcgtaactcttgcctttgttgacaagactgtgagtaattcttagttagacatctcgtctttcttgatagggaatttcacgtgtttacatatgtacttcgcag
species | Physcomitrella patens |
transcript | PP1S539_1V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAGACGATGGTCATGGCGAAG GTGAAGATGATTCAGCTGCGGGTGGTAAGTCCAAGCAGAGCCGTGGTGAGAEST: gi|37824901|gb|BJ582967.1|BJ582967
genomic: TGGAGACGATGGTCATGGCGAAGgtcctttcca ... tacttcgcagGTGAAGATGATTCAGCTGCGGGTGGTAAGTCCAAGCAGAGCCGTGGTGAGA
EST: GTCATGGCGAAG GTGAAGATGATTCAGCTGCGGGTGGTAAGTCCAAGCAGAGCCGTGGTGAGAEST: gi|37821412|gb|BJ579478.1|BJ579478
genomic: GTCATGGCGAAGgtcctttcca ... tacttcgcagGTGAAGATGATTCAGCTGCGGGTGGTAAGTCCAAGCAGAGCCGTGGTGAGA
EST: TGATGACGACGAGTTTGACGCCCTTGATGGAGACGATGGTCATGGCGAAG GTGAAGATGATTCAGCTGCGGGTGGTAAGTCCAAGCAGAGCCGTGGTGAGAEST: gi|37832326|gb|BJ590338.1|BJ590338
genomic: TGATGACGACGAGTTTGACGCCCTTGATGGAGACGATGGTCATGGCGAAGgtcctttcca ... tacttcgcagGTGAAGATGATTCAGCTGCGGGTGGTAAGTCCAAGCAGAGCCGTGGTGAGA
EST: GTCATGGCGAAG GTGAAGATGATTCAGCTGCGGGTGGTAAGTCCAAGCAGAGCCGTGGTGAGA
genomic: GTCATGGCGAAGgtcctttcca ... tacttcgcagGTGAAGATGATTCAGCTGCGGGTGGTAAGTCCAAGCAGAGCCGTGGTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGAGCCCACCATAGAGGACGCCAAGGACGACGACGACGATGAAGACGATGATGACGACGAGTTTGACGCCCTTGATGGAGACGATGGTCATGGCGAAGgtcctttccatcaaatccccttcccatacttttcgtaactcttgcctttgttgacaagactgtgagtaattcttagttagacatctcgtctttcttgatagggaatttcacgtgtttacatatgtacttcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA