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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGGCGGATTCTTGTGGCAATGGGGGATTATTGACTACGCCGGCGGTTATGTCATTCATCTCTCATCTGGTGTTGCTGGCTTCACAGCCGCTTATTGGgtgagaaccaactcgttgtttttgtttaattagccgaggatacgccatatcgacgtggtgattttccaagaatcattttccgggttctaatttgctgcaa...

Basic information

species Physcomitrella patens
transcript PP1S4_201V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S4_201V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA05G33010.1 (Glycine max), 5'ss of exon 1
GGGTGGCGGATTCTTGTGGCAATGGGGGATTATTGACTACGCCGGCGGTTATGTCATTCATCTCTCATCTGGTGTTGCTGGCTTCACAGCCGCTTATTGGgtgagaaccaactcgttgtttttgtttaattagccgaggatacgccatatcgacgtggtgattttccaagaatcattttccgggttctaatttgctgcaa-----
|||||| || |||||||  || |||||  |||| |||||| | || |||||||| ||||||||||| || ||  ||||||||||||| || |||||||||||  |    |  ||  |  ||    ||    | || | | | |  ||| |  |  |    || |  |   || |||    |    | |  |||  ||        
GGGTGGAGGGTTCTTGTTCCACTGGGGCGTTATGGACTACTCTGGTGGTTATGTTATTCATCTCTCTTCCGGGATTGCTGGCTTCACTGCTGCTTATTGGgtttg--ttacttcacttcttacactt--ccaccctaaggt-catcatttttaattttctatatggccgcaaccatgcaacctaatttcgtttcttgatgagagt

upper sequence: PP1S4_201V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv07s0031g02990.t01 (Vitis vinifera), 5'ss of exon 1
GGGTGGCGGATTCTTGTGGCAATGGGGGATTATTGACTACGCCGGCGGTTATGTCATTCATCTCTCATCTGGTGTTGCTGGCTTCACAGCCGCTTATTGGgtgagaaccaactcgttgtttttgtttaattagccgaggatacgccatatcgacgtggtgattttccaagaatcattt-tccgggt--tctaatttgctgcaa
|||||| || |||||||  || |||||  | || |||||| | || ||||||||||||||| ||||||||||  ||||||||||||| || ||||| |||||  |        | |     |    | ||||| ||    ||      ||  |  |     |||   | || |||||  | |  |   | |  |||| | |  
GGGTGGTGGCTTCTTGTTTCATTGGGGTGTCATGGACTACTCTGGTGGTTATGTCATTCATGTCTCATCTGGGATTGCTGGCTTCACTGCTGCTTACTGGgtctgttttcttccctcccggtccgatcattagacgtaactatttt-cataaattttaatttttaagatgattcattcatgcatgctattttttttgtttc--

upper sequence: PP1S4_201V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv07s0031g02950.t01 (Vitis vinifera), 5'ss of exon 1
GGGTGGCGGATTCTTGTGGCAATGGGGGATTATTGACTACGCCGGCGGTTATGTCATTCATCTCTCATCTGGTGTTGCTGGCTTCACAGCCGCTTATTGGgtgagaaccaactcgttgtttttgtttaattagcc--------gaggatacgccatatcgacgtggtgattttccaagaatcattttccgggttctaatttgctgcaa
|||||| || |||||||  || |||||  | || |||||| | || ||||||||||||||||| || |||||  |||||||||||||  | || |||||||| ||       |  || ||||| |   |||||||         |  ||   |||   | |  |  ||  ||  | |   |||| |||     ||||| | | |    
GGGTGGTGGCTTCTTGTTTCATTGGGGTGTCATGGACTACTCTGGTGGTTATGTCATTCATCTTTCCTCTGGAATTGCTGGCTTCACTACTGCCTATTGGgtcagttttttttttttttttttttaatattagcctgcatcttaaaaattatccaccactaactcatggcttctctatc-tcatcttca----tctaaatagtta---