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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGGCAATTGATGTTGAAATCCAAGCTAAGGAGGTCATGTACCATAAGAGTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtcttagctctcttcaatttttttgtctgcacaaagtagctgtttttacttgcttgggcgtcagtgagctagtgtggctatcaagccctcaagg...

Basic information

species Physcomitrella patens
transcript PP1S4_13V6.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15727787|gb|BI740463.1|BI740463
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|162242113|gb|FC415807.1|FC415807
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|37847070|gb|BJ605078.1|BJ605078
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|162224724|gb|FC401972.1|FC401972
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|15729037|gb|BI741105.1|BI741105
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|162190053|gb|FC366627.1|FC366627
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|67573833|gb|BJ946657.1|BJ946657
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTANAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|37821216|gb|BJ579282.1|BJ579282
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|37827419|gb|BJ585431.1|BJ585431
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|18339814|gb|BJ171841.1|BJ171841
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|67692351|gb|BJ952584.1|BJ952584
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|7583788|gb|AW699692.1|AW699692
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|162206018|gb|FC382803.1|FC382803
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|162190054|gb|FC366628.1|FC366628
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|67697220|gb|BJ957453.1|BJ957453
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|162224723|gb|FC401971.1|FC401971
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
EST: gi|208379329|gb|DC918987.1|DC918987
EST:     GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAG                         GTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG
genomic: GTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtct ... gtatctccagGTAGAAAAGGACATTGATAGGGATCGATACATGTCTCCTATTGAAGCGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAGGCAATTGATGTTGAAATCCAAGCTAAGGAGGTCATGTACCATAAGAGTAACGTCATTCGTATTTTATCCGAGATTACGGGGCGGTCTATTGAGCAGgtatgcgtcttagctctcttcaatttttttgtctgcacaaagtagctgtttttacttgcttgggcgtcagtgagctagtgtggctatcaagccctcaagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG