1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCCACTGAGTCAAGATGGGGCCGTGCGGACGGGATTTCCATCCATTCAGGTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGAAAAAAgtgagtcctttttttgaacttcatttcgtgcacatgggcgatgtaacaatctcttgtgtggttactactcaaatctaagaaagaaaaattactcccagat...
species | Physcomitrella patens |
transcript | PP1S49_90V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGNNNNNN NTGGATGATTGATGCACCAGATGTTCAAATGGTAGCTTCGACAGCCAATGAEST: gi|15728655|gb|BI740901.1|BI740901
genomic: GTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGAAAAAAgtgagtcctt ... attttgacagATGGATGATTGATGCACCAGATGTTCAAATGGTAGCTTCGACAGCCAATGA
EST: GTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGNNNNNN NTGGATGATTGATGCACCAGATGATCGAATGGTAGCTTCGACAGCCAATGAEST: gi|22133412|gb|BQ827722.1|BQ827722
genomic: GTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGAAAAAAgtgagtcctt ... attttgacagATGGATGATTGATGCACCAGATGTTCAAATGGTAGCTTCGACAGCCAATGA
EST: GTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGNNNNNN NTGGATGATTGATGCACCAGATGTTCAAATGGTAGCTTCGACAGCCAATGAEST: gi|208367923|gb|DC950976.1|DC950976
genomic: GTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGAAAAAAgtgagtcctt ... attttgacagATGGATGATTGATGCACCAGATGTTCAAATGGTAGCTTCGACAGCCAATGA
EST: GTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGNNNNNN NTGGATGATTGATGCACCAGATGTTCAAATGGTAGCTTCGACAGCCAATGA
genomic: GTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGAAAAAAgtgagtcctt ... attttgacagATGGATGATTGATGCACCAGATGTTCAAATGGTAGCTTCGACAGCCAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCACTGAGTCAAGATGGGGCCGTGCGGACGGGATTTCCATCCATTCAGGTCGTGGATCATTTTGCAAGTGTTCCACAGACCTCTTTAGGTCGAAAAAAgtgagtcctttttttgaacttcatttcgtgcacatgggcgatgtaacaatctcttgtgtggttactactcaaatctaagaaagaaaaattactcccagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa