Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTAGTGTGATTGCGGAAGCGGCACCTTATGTGCGCCCACCCCCTCGGAAGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttggggtcatgatgtaaagtcttttttcttttttctttttttctttttttctctaaaccctctgttgctaaaatactcattctcttttcatcag...

Basic information

species Physcomitrella patens
transcript PP1S49_289V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162212392|gb|FC388120.1|FC388120
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
EST: gi|100366441|gb|BY985136.1|BY985136
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCAGGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
EST: gi|162156192|gb|FC332567.1|FC332567
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
EST: gi|100430914|gb|BY959933.1|BY959933
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAGAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
EST: gi|100422753|gb|BY957983.1|BY957983
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
EST: gi|100378919|gb|BY986483.1|BY986483
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
EST: gi|18347724|gb|BJ179771.1|BJ179771
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
EST: gi|100353366|gb|BY964770.1|BY964770
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
EST: gi|162237927|gb|FC412528.1|FC412528
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
EST: gi|162158209|gb|FC335252.1|FC335252
EST:     AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAG                         GTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT
genomic: AGGCACTCTCGTTGTGGGGCGGTTGTGCGAAGGACTCGGAAAATTTACAGgtgaatttgg ... tgtatgcaagGTGCATGTGTCATTAGCGGGGGCAAAGCACATGAGAGTATCATGGATGAGT