Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100394167|gb|BY971972.1|BY971972EST: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAG CTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
genomic: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAGgtattcacag ... gttattccagCTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
EST:
gi|100442941|gb|BY963436.1|BY963436EST: CTGAAGAAGTTGTGGGGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAG CTTGGTCTTGCTGGATGCACCCGGGTGAGTGCGGAGGCAATACTAAGAATG
genomic: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAGgtattcacag ... gttattccagCTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
EST:
gi|100444208|gb|BY982237.1|BY982237EST: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAG CTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
genomic: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAGgtattcacag ... gttattccagCTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
EST:
gi|162214691|gb|FC391762.1|FC391762EST: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAG CTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
genomic: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAGgtattcacag ... gttattccagCTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
EST:
gi|208377094|gb|DC936826.1|DC936826EST: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAG CTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
genomic: CTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAGgtattcacag ... gttattccagCTTGGTCTTGCTGGATGCACCGGGGTGAGTGCGGAGGCAATACTAAGAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCGCAAGGTCGTCTCCAGTCTCTCAGCTTAGTCAAGTGTTTGAAAATATCTGAAGAAGTTGTGGAGGCAGTCCTAGTAGCAAATCCTTTGGTTCACAAGgtattcacagcctgggcaacctctgtaatttgtaacctggaatattttctacaacgaattcgttttctaatctaatgtcttcacacctgtgctgatgttattccag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG