1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGATCTTTGCGTTGAGTAGCAACGATTTCAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaaggtctttctcactcttgttgctgccgagaatttatccttcatgtgtcaacggtagcaaatacctcaaatgaaccatagaagaatttgtgt...
species | Physcomitrella patens |
transcript | PP1S49_243V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|208374301|gb|DC941142.1|DC941142
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|100388850|gb|BY988726.1|BY988726
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|100362161|gb|BY947220.1|BY947220
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|208348263|gb|DC905505.1|DC905505
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|208344391|gb|DC912750.1|DC912750
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|208379070|gb|DC911595.1|DC911595
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|67573240|gb|BJ946064.1|BJ946064
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|162221894|gb|FC398162.1|FC398162
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|208379038|gb|DC907787.1|DC907787
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGCEST: gi|208392456|gb|DC904274.1|DC904274
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
EST: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAG AGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
genomic: CAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaa ... ggtggttaagAGTTTTTGCACGTGAAGCCCGGCAAGGGAGCAGCGTTTGTTCGTACCAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATCTTTGCGTTGAGTAGCAACGATTTCAGGAATGGAACCAACATTGTGCTTGATGGAGTACCGTGGAGGGTGCAAGgtacaatgaaggtctttctcactcttgttgctgccgagaatttatccttcatgtgtcaacggtagcaaatacctcaaatgaaccatagaagaatttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG