Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGGACTTGGACAGTATTGACTGGGATCATCTGTCTCTCGAAAGTACTTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcacacactgtcaaccctttctgccgctccttttttcacttttttcctttcaaattcacaagtgtgtttcgttgcatcagcgacctcaactgagaattaaatgattgcttcaaatgaatttttgtag

Basic information

species Physcomitrella patens
transcript PP1S49_242V6.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100398885|gb|BY990564.1|BY990564
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATCGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208394962|gb|DC915671.1|DC915671
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162240277|gb|FC414322.1|FC414322
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|67693719|gb|BJ953952.1|BJ953952
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162240278|gb|FC414323.1|FC414323
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162174477|gb|FC350756.1|FC350756
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162216739|gb|FC393598.1|FC393598
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208347614|gb|DC925543.1|DC925543
EST:     TCCGNTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAA-TTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162259521|gb|FC435448.1|FC435448
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162207392|gb|FC383949.1|FC383949
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208383196|gb|DC928224.1|DC928224
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|37839564|gb|BJ597572.1|BJ597572
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|37851359|gb|BJ609367.1|BJ609367
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208355737|gb|DC910531.1|DC910531
EST:     TTCCGCTACTTTGCACTTGAGCCTCA-GANCATGAACAAATNCGACATTG                         GGATCA-GTCATNCNAATATGATCTGCAGCTCGAA-ATGTATCTAT
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTAT
EST: gi|37851870|gb|BJ609878.1|BJ609878
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162231457|gb|FC407907.1|FC407907
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208399910|gb|DC925192.1|DC925192
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162200216|gb|FC376582.1|FC376582
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|18340981|gb|BJ173013.1|BJ173013
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208383578|gb|DC903535.1|DC903535
EST:     TTCCGCTACTTTGCACTTGAGCCTCA-GAACATGAACAAATTCGACATTG                         GGATCA-GTCATTCNAATATGATCTGCAGCTCGGAGATGTATCTATTGNAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208346482|gb|DC917435.1|DC917435
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208397881|gb|DC916188.1|DC916188
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208396800|gb|DC924356.1|DC924356
EST:     TGCACTTGAGCNTCAAGAACATGAACAAATTNGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208400298|gb|DC924936.1|DC924936
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162200217|gb|FC376583.1|FC376583
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208347806|gb|DC917555.1|DC917555
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162267039|gb|FC441840.1|FC441840
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162178658|gb|FC353940.1|FC353940
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208382490|gb|DC923160.1|DC923160
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208396651|gb|DC929030.1|DC929030
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162235077|gb|FC411212.1|FC411212
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|37844745|gb|BJ602753.1|BJ602753
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162213606|gb|FC389686.1|FC389686
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|37850436|gb|BJ608444.1|BJ608444
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|37842936|gb|BJ600944.1|BJ600944
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162231458|gb|FC407908.1|FC407908
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162267040|gb|FC441841.1|FC441841
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208380297|gb|DC922719.1|DC922719
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|67693906|gb|BJ954139.1|BJ954139
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|37846737|gb|BJ604745.1|BJ604745
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162236071|gb|FC412230.1|FC412230
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|67698138|gb|BJ958371.1|BJ958371
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|18336098|gb|BJ168120.1|BJ168120
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|37832283|gb|BJ590295.1|BJ590295
EST:     TCCGCTACTTTNGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCA-TCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TCCGCTACTTT-GCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162259522|gb|FC435449.1|FC435449
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162235076|gb|FC411211.1|FC411211
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162236070|gb|FC412229.1|FC412229
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|162205336|gb|FC382045.1|FC382045
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208398797|gb|DC920745.1|DC920745
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208350312|gb|DC925760.1|DC925760
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAGATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGGA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|208357796|gb|DC902320.1|DC902320
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATNCGACATTG                         GGATCA-GTCATNCGAATATGATCTGCAGCTCGGAAATGTATCTAT
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTAT
EST: gi|162216738|gb|FC393597.1|FC393597
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
EST: gi|37842531|gb|BJ600539.1|BJ600539
EST:     TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTG                         GGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA
genomic: TTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcac ... atttttgtagGGATCAAGTCATTCGAATATGATCTGCAGCTCGGAGATGTATCTATTGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTGGACTTGGACAGTATTGACTGGGATCATCTGTCTCTCGAAAGTACTTCCGCTACTTTGCACTTGAGCCTCAAGAACATGAACAAATTCGACATTGgtaacctcacacactgtcaaccctttctgccgctccttttttcacttttttcctttcaaattcacaagtgtgtttcgttgcatcagcgacctcaactgagaattaaatgattgcttcaaatgaatttttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC