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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGACGCCTGTCCGACTCGGAGCCCTTCCGAGCGATTTTCTCGCGACAATGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAGgtgagcacactgactgcgctctgtttgtctcagcctgaaagaacatggtcttcaattgttgcccctctgaccgtctctgccgaagcacatattgctgaagctaatggtttcgtgtaattgatccttcgttaattgtacag

Basic information

species Physcomitrella patens
transcript PP1S49_225V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37853523|gb|BJ611531.1|BJ611531
EST:     TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAG                         GTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
genomic: TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAGgtgagcacac ... aattgtacagGTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
EST: gi|18334307|gb|BJ166324.1|BJ166324
EST:     TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAG                         GTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
genomic: TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAGgtgagcacac ... aattgtacagGTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
EST: gi|162182160|gb|FC358175.1|FC358175
EST:     TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAG                         GTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
genomic: TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAGgtgagcacac ... aattgtacagGTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
EST: gi|37849083|gb|BJ607091.1|BJ607091
EST:     TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAG                         GTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
genomic: TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAGgtgagcacac ... aattgtacagGTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
EST: gi|18334308|gb|BJ166325.1|BJ166325
EST:     TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAG                         GTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
genomic: TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAGgtgagcacac ... aattgtacagGTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
EST: gi|208364394|gb|DC950695.1|DC950695
EST:     TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAG                         GTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA
genomic: TGACGGCTCTCGACGTGGATCTGGATTCCGTTCACGTGTTACTGATGAAGgtgagcacac ... aattgtacagGTCCTTCGTAATGCAATGTACAATTGCTCACCTCTTCAACAAATGGGACAA