1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGACCCCCGAAGCTGCTGTTCCCAATTATGACATTTGGTCTATCAGgtgagaacacgactagtcgttctttttcctcctttttggacaactcaactttgctgtgggattctcggggtgcacattcagaagaagaatgtctaggaag...
species | Physcomitrella patens |
transcript | PP1S49_191V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCTGGACCCCCGAAGCTGCTGTTCCCAATTATGACATTTGGTCTATCAG AAATGACCTAGAACTACCAACTTCAGGCTTTATGGGGCAGTCTCCAAGAGCEST: gi|7148089|gb|AW510011.1|AW510011
genomic: TTCTGGACCCCCGAAGCTGCTGTTCCCAATTATGACATTTGGTCTATCAGgtgagaacac ... ttttgtgcagAAATGACCTAGAACTACCAACTTCAGGCTTTATGGGGCAGTCTCCAAGAGC
EST: CCCAATTATGACATTTGGTCTATCAG AAATGACCTAGAACTACCAACTTCAGGCTTTATGGGGCAGTCTCCAAGAGCEST: gi|162268713|gb|FC445210.1|FC445210
genomic: CCCAATTATGACATTTGGTCTATCAGgtgagaacac ... ttttgtgcagAAATGACCTAGAACTACCAACTTCAGGCTTTATGGGGCAGTCTCCAAGAGC
EST: TTCTGGACCCCCGAAGCTGCTGTTCCCAATTATGACATTTGGTCTATCAG AAATGACCTAGAACTACCAACTTCAGGCTTTATGGGGCAGTCTCCAAGAGC
genomic: TTCTGGACCCCCGAAGCTGCTGTTCCCAATTATGACATTTGGTCTATCAGgtgagaacac ... ttttgtgcagAAATGACCTAGAACTACCAACTTCAGGCTTTATGGGGCAGTCTCCAAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCAGGAAACTTGTGGCGCGTGCAGCTATCAATTCCTCAGGATTCTGGACCCCCGAAGCTGCTGTTCCCAATTATGACATTTGGTCTATCAGgtgagaacacgactagtcgttctttttcctcctttttggacaactcaactttgctgtgggattctcggggtgcacattcagaagaagaatgtctaggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaagaa