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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGCTTCTTCTTCGAGGGGCAAGGAAATTGCCGGAAACGGTGGGAAAAGTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAGgtgtgttgcttaattcccccctgtttgtatatgtatatgtgaagtacgtctaagtaatttgttgagtataatcgacgcgtaccctactgacttactctgc...

Basic information

species Physcomitrella patens
transcript PP1S497_3V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208368792|gb|DC943792.1|DC943792
EST:     GTGCAATGCTCGAGGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAG                         AAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG
genomic: GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAGgtgtgttgct ... cgtaatgcagAAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG
EST: gi|100404070|gb|BY955240.1|BY955240
EST:     GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAG                         AAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG
genomic: GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAGgtgtgttgct ... cgtaatgcagAAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG
EST: gi|208378412|gb|DC923055.1|DC923055
EST:     GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAG                         AAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG
genomic: GTGCAATGCTCGAAGCTTTTCATCAATTTCAGCACAACCCGCAGGTTCAGgtgtgttgct ... cgtaatgcagAAAATGGTGGTCTCTTTAGCCACGGACAAGGGAGTGTGGGATGCTGTGTTG