1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAGCATTGTGACACAGAGAAAGATCCACATTCTCCTTATGAAGGTTTCTGGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGAgtgagcatcactctctgctttcgtgtgaaatatatatatatatatatatatatatatatatatttatactcatattttctctaagagttttcacttcaggtcgaggatttgtcttgcttggttcttttagatttgattagagtgtgtctggcag
species | Physcomitrella patens |
transcript | PP1S495_13V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGA GTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAGEST: gi|162231669|gb|FC408262.1|FC408262
genomic: CATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGAgtgagcatca ... tgtctggcagGTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAG
EST: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGA GTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAGEST: gi|162231668|gb|FC408261.1|FC408261
genomic: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGAgtgagcatca ... tgtctggcagGTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAG
EST: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGA GTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAGEST: gi|162171757|gb|FC348426.1|FC348426
genomic: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGAgtgagcatca ... tgtctggcagGTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAG
EST: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGA GTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAGEST: gi|37851278|gb|BJ609286.1|BJ609286
genomic: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGAgtgagcatca ... tgtctggcagGTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAG
EST: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGA GTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAGEST: gi|18335242|gb|BJ167260.1|BJ167260
genomic: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGAgtgagcatca ... tgtctggcagGTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAG
EST: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGA GTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAGEST: gi|162195066|gb|FC368780.1|FC368780
genomic: GGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGAgtgagcatca ... tgtctggcagGTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCAG
EST: GCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGGA GTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCA
genomic: GCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAA-GAgtgagcatca ... tgtctggcagGTCGGGGCTCGGAATAACGTTGGTGACATGGACAAAGATCCTTTTTATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGCATTGTGACACAGAGAAAGATCCACATTCTCCTTATGAAGGTTTCTGGCACAGTCACATGGGATGGTTACTGGATGACAGAAGAACTCAAGAAAGAgtgagcatcactctctgctttcgtgtgaaatatatatatatatatatatatatatatatatatttatactcatattttctctaagagttttcacttcaggtcgaggatttgtcttgcttggttcttttagatttgattagagtgtgtctggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA