ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccgtccagagctaaaatttacatttcgcgtgaattagcgactcccatcccttttaggcacaattagtagaaaatatcaagactaataagttca...

Basic information

species	Physcomitrella patens
transcript	PP1S490_20V6.3
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA02G35990.1 (Glycine max), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagt-----tccgtccagagctaaaatttacatttcgcgtgaattagcgactc-ccatcccttttaggcacaattagtagaaaatatcaagactaataagttca
 || ||||| ||||| |||||||| || |||||||| ||||| |||||||||||| | | ||||||||||||||| ||||| |||||||| ||     | || | |      | || ||      | |||||   ||    || ||  | | |    |||   | | ||   ||  ||  ||       | | |    | |     
TGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACGATTATTGGCCCCCATAATgtaaatatttccctgttcactctgtagatttatcctt---atggatgtgtgtccaatcatagttatcagttgcatgtaagaggctgcccccaaaaaggttaaa---

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA10G09280.2 (Glycine max), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagt-----tccgtccagagctaaaatttacatttcgcgtgaattagcgactc-ccatcccttttaggcacaattagtagaaaatatcaagactaataagttca
||| ||||| ||||| |||||||| || |||||||| ||||| |||||||||||| | | ||||||||||||||| ||||| |||||||| ||     | || |||     || || ||      | ||| |  |||    |||||  | | |    |||   | | |    ||  ||  ||       ||| | |  ||| |   
AGAAAAAGGAATTGGAGATGGCACAGTTAGCTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATgtaagtatttctctgttcactctgtagattcatcttt---atgaatgtgtgtccaatcatagttatcaattgcatgtaagagctgcccccaaaaatgttaaat---

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA03G26580.1 (Glycine max), 5'ss of exon 1

---------AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCA-CTATTATTGGACCAAGCCACgtcagttccgtccagag-ctaaaatttac--atttcgcgtgaattagcgactcccatcccttttaggcacaattagtagaaaatatcaagactaataagttca
          || ||||| ||||| |||||||| || | |||||| ||||| |||||||||||| | | |||||||||||||||      |    ||      ||      |  ||||  ||   ||  | |   |||   || |  |   || | |  | |   ||   |  ||   |||||||  | ||||| | || | | |        
TGAACGTGGTGAAAAAGGAATTGGAGATGGCACAGTTAACTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTATTGGCCCCCATAATgtaaatatttctttgttcactctgtagattcatccttatcgatgttacccaaaattggaaatataat---tgataaaaacaatta--aaaaaatctaaacagtga--------

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA19G38450.1 (Glycine max), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagt-tccgtccagagcta----aaatttacatttcgcgtgaattagcgactcccatcccttttaggc-acaattagtagaaaatatcaagactaataagttca
||| ||||| || || |||||||| || || ||||| ||||| |||||||||||| | | ||||||||||||||| || || |||||||| ||     | || | | |   || |   ||      | |||   ||   |    ||  ||   |   ||    | ||    |    || |||  ||| |  |   ||  ||     
AGAAAAAGGAATAGGAGATGGCACAGTTAGTTATGGAATGGATGATGGTGATGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGTCCCTATAATgtaaatatttatctaacactgccttgatttttttttcttcaaatatgtgcatgttaaatgagctgtattttatttgtactagtgaattttcatg-tagcaa-----

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA03G35790.1 (Glycine max), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagt-tccgtccagagctaaaatttacatttcgcgtgaattagcgactcccatcccttttaggcacaatt--agtagaaaatatcaagactaataagttca
||| ||||| || || ||||| || || |||||||| ||||| |||||||| ||| | | ||||||||||||||| || || |||||||| ||     | || | | |   || |   ||    || |  |||    |  || |   |    ||| |    |  ||   |||  | | |||      ||   | ||   |   
AGAAAAAGGAATCGGAGATGGAACAGTTAGCTATGGAATGGATGATGGTGACGACATTTACATGCGCTCTTGGACTGGAACCATTATTGGCCCCTATAATgtaaatatttatctattactgcc-ttgattttttttttctatcaaatatgtgcatgctaaatgagctgtattttatttgaaccagcgaattttcatgtatc--

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA15G21780.1 (Glycine max), 5'ss of exon 1

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagt-----tccgtccagagctaaaatttacatttcgcgtgaattagcgactcccatcccttttaggcaca-attagtagaaaatatcaagactaataagttca
 || ||||| ||| | ||||||||  | |||||||  ||||| |||||||||||| | | |||||||||| |||| ||||| |||||||| ||     | || | |     || || ||      | ||| |   ||  ||     |  | | |   ||   | | ||   ||  | ||  |       ||| | |  |||     
TGAAAAAGGAATTAGAGATGGCACAATTAGCTATGTAATGGATGATGGTGATGACATTTACATGCGCTCTAGGACTGGCACCATTATTGGCCCCCAAAATgtaaatatttctctgttcactctgtagattcatccttatcgatgtgtgtccaatg--atagttatcagttgcatgtaagaggctgcccccaaaaatgttaaa----

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT2G36060.3 (Arabidopsis thaliana), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccgtc-cagagctaaaatttacatttcgcgtgaat--tagcgactcccatcccttttaggcacaattagtagaaaatatcaagac-taataagttca-----------------------
||||||||||||||| ||||| || || |||||||| ||||| ||||| |||||| | |  |||||||||||||| |||||||| || || ||   | |||| ||||   || | |   |    | | || ||    |||||  |||    |    ||   ||   | |   |      |  ||||   ||  | ||  | ||                        
AGAGAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACAACgt-agttatatctctgtttttttttcttcacttgctatgaatgataggactttgtgtcttcttcttgaatggtgttggaatgatattgtgatgtgatttgatctgactggtaattttgtttgtgcag

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT2G36060.2 (Arabidopsis thaliana), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccgtc-cagagctaaaatttacatttcgcgtgaat--tagcgactcccatcccttttaggcacaattagtagaaaatatcaagac-taataagttca-----------------------
   |||||||||||| ||||| || || |||||||| ||||| ||||| |||||| | |  |||||||||||||| |||||||| || || ||   | |||| ||||   || | |   |    | | || ||    |||||  |||    |    ||   ||   | |   |      |  ||||   ||  | ||  | ||                        
---GAAAGGTATTGGAGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACTATCATCGGTCCTCACAACGT-Agttatatctctgtttttttttcttcacttgctatgaatgataggactttgtgtcttcttcttgaatggtgttggaatgatattgtgatgtgatttgatctgactggtaattttgtttgtgcag

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G52560.4 (Arabidopsis thaliana), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGG--------ACCAAGCCACgtcagttccgtccagagctaaaatttacatttcgcgtgaattagcgactcccatcccttttaggcacaattagtagaaaatatcaagactaataagttca-------------------------------------------------------------------------------
 |||||||||||||| ||||| || || |||||||| ||||| ||||| |||||| | |  ||||| |||||||| ||||| || || ||        ||  ||  |  ||  || | |     ||||| |||  |  ||||  |  ||    |    | ||   ||| ||   ||   | ||  |    |     || ||   ||                                                                                 
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctc-cttcgtcttcatatatgttaacaattgttttgagaagcatagattaatattatttgcatctcattgcttggaatacagaacatcaaaaccacattgttttctaggcattgatcttatcgacatacaatctcttaagctttatttgagcag

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G52560.1 (Arabidopsis thaliana), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGG--------ACCAAGCCACgtcagttccgtccagagctaaaatttacatttcgcgtgaattagcgactcccatcccttttaggcacaattagtagaaaatatcaagactaataagttca
 |||||||||||||| ||||| || || |||||||| ||||| ||||| |||||| | |  ||||| |||||||| ||||| || || ||        ||  ||  |  ||  || | |     ||||| |||  |  ||||  |  ||    |    | ||   ||| ||   ||   | ||  |    |     || ||       
GGAGAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACgtagttatatctttttctttatctgctaacattctc-cttcgtcttcatatatgttaacaattgttttgagaagcatagattaatattatttgcatctcat-------

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT3G52560.2 (Arabidopsis thaliana), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCA--------AGCCACgtcagttccgtccagagctaaaatttacatttcgcgtgaattagcgactcccatcccttttaggcacaattagtagaaaatatcaagactaataagttca
   |||||||||||| ||||| || || |||||||| ||||| ||||| |||||| | |  ||||| |||||||| ||||| || || || ||         ||  |  ||  || | |     ||||| |||  |  ||||  |  ||    |    | ||   ||| ||   ||   | ||  |    |     || ||       
---GAAAGGTATTGGGGATGGAACTGTGAGCTATGGAATGGATGATGGAGATGACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACGTAgttatatctttttctttatctgctaacattctc-cttcgtcttcatatatgttaacaattgttttgagaagcatagattaatattatttgcatctcattgc----

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G23260.1 (Arabidopsis thaliana), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagt-tccgtcca--gagctaaaatttacatttcgcgtgaattagcgactcccatcccttttaggcacaattagtagaaaatatcaagactaataagttca
 |||||||||||||| ||||| || || |||||||| ||||| |||| ||||||  | |  ||||  |||||||| ||||| ||| |||| ||     | ||  || ||  || |  || ||   | ||   |||    |  ||  | |  |   ||    |  ||   |||||  || | | | |   ||   |   |||  
TGAGAAAGGTATTGGAGATGGTACTGTTAGCTATGGAATGGATGATGCTGATGATATTTATATGCAATCTTGGACTGGCACCATTCTTGGTCCTCCTAATgtatgtatctctctatcgatctctgagttttgttttagatttatctgtg--tttgatagagtaaagatgcaattttta-acacttttgtgagagaattgttgg

upper sequence: PP1S490_20V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv08s0007g02580.t01 (Vitis vinifera), 5'ss of exon 2

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccgtccagagctaaaatttacatttcgcgtgaattagc---gactcccatcccttttaggcacaattagtagaaaatatcaagactaataagttca
||| || |||||||| ||||| || ||||||||||| ||||| ||||| |||||| | |  |||||||||||||| ||||| || || || ||     | || ||| || |    |   | ||  | | ||     |   ||      |   |    |   | |  |||  | |  || | | | |  | | || ||  |   
AGAAAAGGGTATTGGAGATGGTACTGTCAGCTATGGAATGGATGATGGAGATGACATTTATATGCGCTCTTGGACTGGCACCATCATCGGTCCTCATAATgtaagtgcccttttaaagaacaacatgctttatatattctttgatcttgttacgtgacaaatatcagcatcactcttatata-tgttgata-tactacatgt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|208365088|gb|DC947324.1|DC947324

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|37821329|gb|BJ579395.1|BJ579395

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|162211664|gb|FC387952.1|FC387952

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|67573475|gb|BJ946299.1|BJ946299

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|100446255|gb|CJ970554.1|CJ970554

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|162176507|gb|FC352976.1|FC352976

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|208388041|gb|DC941694.1|DC941694

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|162248628|gb|FC424481.1|FC424481

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|162260755|gb|FC435407.1|FC435407

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|67696855|gb|BJ957088.1|BJ957088

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|18348930|gb|BJ180979.1|BJ180979

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|15320319|gb|BI488125.1|BI488125

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|18355140|gb|BJ187199.1|BJ187199

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|100447101|gb|CJ971400.1|CJ971400

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|162245980|gb|FC424378.1|FC424378

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

EST: gi|67575457|gb|BJ948281.1|BJ948281

EST:     ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCAC                         TCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC
genomic: ATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGAC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 1 RNA-Seqlibrary.

Block sizes: 26 (upstream exon), 24 (downstream exon)
Score: 7

AGAGAAAGGTATTGGCGATGGCACCGTCAGCTATGGCATGGACGATGGTGATGACGTATTCATGCGCTCTTGGACCGGCACTATTATTGGACCAAGCCACgtcagttccg ... gtttgtacagTCAGTTCATGAAGGTCGTATCTACACATTGAAACTGTTCTGCGACAAGGACTACCCCGATAAGCCACCAACTGTTAGATTCCATTCTCGGATCAACATGA