1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TATATTGGATACTGTGCTGGGGTTTGGATCCGACTATCTCAAAGTACATGACTTTGATGCTTGTTTCGATGGAATGGCCGTCGTTTTGAGTGATGAGCAGgtaaattgaatctcttctgcacttttgaagatttactgacattcctgtctgatttcaatgttgagaaagacgttcaaaactacacttttgtaaatatcta...
species | Physcomitrella patens |
transcript | PP1S48_63V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTTTGATGCTTGTTTCGATGGAATGGCCGTCGTTTTGAGTGATGAGCAG GCCGCAGCGCTGAAATCAAATCCATTAATTAGGTCTATGGAGTTAGACGAAEST: gi|100385784|gb|BY987849.1|BY987849
genomic: ACTTTGATGCTTGTTTCGATGGAATGGCCGTCGTTTTGAGTGATGAGCAGgtaaattgaa ... tgatatgaagGCCGCAGCGCTGAAATCAAATCCATTAATTAGGTCTATGGAGTTAGACGAA
EST: ACTTTGATGCTTGTTTCGATGGAATGGCCGTCGTTTTGAGTGATGAGCAG GCCGCAGCGCTGAAATCAAATCCATTAATTAGGTCTATGGAGTTAGACGAAEST: gi|18361847|gb|BJ193914.1|BJ193914
genomic: ACTTTGATGCTTGTTTCGATGGAATGGCCGTCGTTTTGAGTGATGAGCAGgtaaattgaa ... tgatatgaagGCCGCAGCGCTGAAATCAAATCCATTAATTAGGTCTATGGAGTTAGACGAA
EST: CTTTGATGCTTGTTTCGATGGAATGGCCCGTCGTTTTGAGTGATGAGCAG GCCGCAGCGCTGAAATCAAATCCATTAATTAGGTCTATGGAGTTAGACGAAEST: gi|18363054|gb|BJ195126.1|BJ195126
genomic: CTTTGATGCTTGTTTCGATGGAATGGCC-GTCGTTTTGAGTGATGAGCAGgtaaattgaa ... tgatatgaagGCCGCAGCGCTGAAATCAAATCCATTAATTAGGTCTATGGAGTTAGACGAA
EST: ACTTTGATGCTTGTTTCGATGGAATGGCCGTCGTTTTGAGTGATGAGCAG GCCGCAGCGCTGAAATCAAATCCATTAATTAGGTCTATGGAGTTAGACGAA
genomic: ACTTTGATGCTTGTTTCGATGGAATGGCCGTCGTTTTGAGTGATGAGCAGgtaaattgaa ... tgatatgaagGCCGCAGCGCTGAAATCAAATCCATTAATTAGGTCTATGGAGTTAGACGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATATTGGATACTGTGCTGGGGTTTGGATCCGACTATCTCAAAGTACATGACTTTGATGCTTGTTTCGATGGAATGGCCGTCGTTTTGAGTGATGAGCAGgtaaattgaatctcttctgcacttttgaagatttactgacattcctgtctgatttcaatgttgagaaagacgttcaaaactacacttttgtaaatatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG