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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCCTCGTTCAGCAAGAAGCAACAATGGATCGATTTGTTGACATACCCGATGAGGTTCTTCAAGTGTACAAGCTCTGGCGCCCGAGCCCTCTGTACAGgtgcgataatgatgaatacatagttacgtggttgaagaatattgcacttcggatcatgtcacagcgaacctacctcgtaggtttgtcacttcattaatgt...

Basic information

species Physcomitrella patens
transcript PP1S48_37V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162198036|gb|FC372063.1|FC372063
EST:     CCGAGCCCTCTGTACAG                         GGCTTGGAGACTTGAAAAATTATTGGATACACCAGCACGGATCTACTACAA
genomic: CCGAGCCCTCTGTACAGgtgcgataat ... atgaggacagGGCTTGGAGACTTGAAAAATTATTGGATACACCAGCACGGATCTACTACAA
EST: gi|162187056|gb|FC362838.1|FC362838
EST:     GATGAGGTTCTTCAAGTGTACAAGCTCTGGCGCCCGAGCCCTCTGTACAG                         GGCTTGGAGACTTGAAAAATTATTGGATACACCAGCACGGATCTACTACAA
genomic: GATGAGGTTCTTCAAGTGTACAAGCTCTGGCGCCCGAGCCCTCTGTACAGgtgcgataat ... atgaggacagGGCTTGGAGACTTGAAAAATTATTGGATACACCAGCACGGATCTACTACAA
EST: gi|100355506|gb|BY945968.1|BY945968
EST:     GATGAGGTTCTTCAAGTGTACAAGCTCTGGCGCCCGAGCCCTCTGTACAG                         GGCTTGGAGACTTGAAAA-TTATTGGATACACCAGCACGGATCTACTACNA
genomic: GATGAGGTTCTTCAAGTGTACAAGCTCTGGCGCCCGAGCCCTCTGTACAGgtgcgataat ... atgaggacagGGCTTGGAGACTTGAAAAATTATTGGATACACCAGCACGGATCTACTACAA
EST: gi|100383718|gb|BY969247.1|BY969247
EST:     GATGAGGTTCTTCAAGTGTACAAGCTCTGGCGCCCGAGCCCTCTGTACAG                         GGCTTGGAGACTTGNAAAAAT-ATTGGATACACCAGCACGGATCTACTACN
genomic: GATGAGGTTCTTCAAGTGTACAAGCTCTGGCGCCCGAGCCCTCTGTACAGgtgcgataat ... atgaggacagGGCTTGGAGACTTG-AAAAATTATTGGATACACCAGCACGGATCTACTACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCCCTCGTTCAGCAAGAAGCAACAATGGATCGATTTGTTGACATACCCGATGAGGTTCTTCAAGTGTACAAGCTCTGGCGCCCGAGCCCTCTGTACAGgtgcgataatgatgaatacatagttacgtggttgaagaatattgcacttcggatcatgtcacagcgaacctacctcgtaggtttgtcacttcattaatgt

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