1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCAGGAAGGGACGAAGAGGATCAAGAAACGCAACCTAAGTGGGGCTCTTCTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtctttttgtgtgcttagtgtcaagttgagctcgacatgtcttttctctacactacaaatcaatcttttcaccatgtttgtgttggtcatgcca...
species | Physcomitrella patens |
transcript | PP1S48_255V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCAEST: gi|162184335|gb|FC360537.1|FC360537
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCAEST: gi|162178712|gb|FC353968.1|FC353968
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCAEST: gi|100352954|gb|BY945533.1|BY945533
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAAACTGCAEST: gi|162186349|gb|FC361657.1|FC361657
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCAEST: gi|162164266|gb|FC342081.1|FC342081
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAG GTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCAEST: gi|67570257|gb|BJ943081.1|BJ943081
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACGGAGATGACAACCAAGACGACGGCTGGCAGACTGCA
EST: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAN GTTGCATCTACTCACG
genomic: CTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtct ... ttatgtgtagGTTGCATCTACTCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGGAAGGGACGAAGAGGATCAAGAAACGCAACCTAAGTGGGGCTCTTCTCGTCCAGAACGTGAGGACAACCGGCCTTCTGAAGGCAGCTGGGCTAAGgtgatagtctttttgtgtgcttagtgtcaagttgagctcgacatgtcttttctctacactacaaatcaatcttttcaccatgtttgtgttggtcatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG