1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGGAAGACGTCGAGTTAGTCGTGCTTCAAGCCTTTCATTGCAAATGAGTCTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcactagttcttgaacattaggtgcggacaggcagatttgcagacacatagaaagacagatgtacaagcacaacagtcggcaggccggcttgaaag...
species | Physcomitrella patens |
transcript | PP1S48_203V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGAEST: gi|100439351|gb|BY980220.1|BY980220
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
EST: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGAEST: gi|100383854|gb|BY987111.1|BY987111
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
EST: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGAEST: gi|100413133|gb|BY992603.1|BY992603
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
EST: CTGACCTTCAGAGCCTATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATACTGGATGTAGAEST: gi|100355976|gb|BY946132.1|BY946132
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
EST: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGAEST: gi|18330210|gb|BJ162216.1|BJ162216
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
EST: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGAEST: gi|208373478|gb|DC941075.1|DC941075
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
EST: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGAEST: gi|208384905|gb|DC903412.1|DC903412
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
EST: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGAEST: gi|100417698|gb|BY975610.1|BY975610
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
EST: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGAEST: gi|100418558|gb|BY957478.1|BY957478
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
EST: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTG GTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
genomic: CTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcacta ... atcttcgcagGTTGAATGCGGGGGCAGACTGGAACGAGCATCATGGAATAGTGGATGTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGAAGACGTCGAGTTAGTCGTGCTTCAAGCCTTTCATTGCAAATGAGTCTGACCTTCAGAGCCGATGACTGCAACGAACTGCCCAGTATGGAGAATTGgtaagcactagttcttgaacattaggtgcggacaggcagatttgcagacacatagaaagacagatgtacaagcacaacagtcggcaggccggcttgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA