Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGGAAGGCACACGCCCGGTACGTTTACGAATCAGCTGCAGAACACGTTCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgactgaggtgggagacgatggatggtgggagcagagggggttgttttagggctggagggggtgaggaatggataaggtggagaagtggggcggtgtgtgacgatgagttgtattgtgttgtgttatgtttggcag

Basic information

species Physcomitrella patens
transcript PP1S48_103V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S48_103V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os03g08440.1 (Oryza sativa), 5'ss of exon 2
CGCGGGAAGGCACACGCCCGGTACGTTTACGAATCAGCTGCAGAACACGTTCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgactgaggtgggagacgatggatggtgggagcagagggggttgttttagggctggagggggtgaggaatggataaggtggagaagtggggcggtgtgtgacgatgagttgtattgtgttgtgttatgtttggcag
 || |||||||| ||||| ||||| ||||| |||||||| |||| | | |||||||||||| | ||||| ||  | || |||||  | || |||||||||||||             |  ||| | |   || || | |  |||    || ||       ||  | || |    || || | ||    |                                                    
TGCTGGAAGGCATACGCCTGGTACATTTACCAATCAGCTCCAGACCTCCTTCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatgatcaccatgtcacggtagtgcgttggtgaattgggtacagtattgtttactgatcgtgttatcc-tgaattatgtctgcag---------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67693620|gb|BJ953853.1|BJ953853
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162256325|gb|FC432335.1|FC432335
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162222044|gb|FC398611.1|FC398611
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162236069|gb|FC412228.1|FC412228
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|18336589|gb|BJ168611.1|BJ168611
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162261862|gb|FC438386.1|FC438386
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162229521|gb|FC405868.1|FC405868
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162274933|gb|FC450584.1|FC450584
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162269858|gb|FC445388.1|FC445388
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162257037|gb|FC432776.1|FC432776
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162228208|gb|FC404924.1|FC404924
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162260986|gb|FC436899.1|FC436899
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|37828542|gb|BJ586554.1|BJ586554
EST:     CAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: CAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCAC-TGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|37832421|gb|BJ590433.1|BJ590433
EST:     CTGATCACCAG                         CCCATCATGGAGGCAGCTNTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: CTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162215617|gb|FC391683.1|FC391683
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162200638|gb|FC377847.1|FC377847
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162156223|gb|FC332598.1|FC332598
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|37850149|gb|BJ608157.1|BJ608157
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162259869|gb|FC436004.1|FC436004
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|37829274|gb|BJ587286.1|BJ587286
EST:     CAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: CAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCAC-TGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162270986|gb|FC447391.1|FC447391
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162224635|gb|FC401883.1|FC401883
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162228209|gb|FC404925.1|FC404925
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162253575|gb|FC429598.1|FC429598
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162256326|gb|FC432336.1|FC432336
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|18368861|gb|BJ200946.1|BJ200946
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162269653|gb|FC445586.1|FC445586
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|18329169|gb|BJ161175.1|BJ161175
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162269859|gb|FC445389.1|FC445389
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162223267|gb|FC400236.1|FC400236
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162253576|gb|FC429599.1|FC429599
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162268481|gb|FC444354.1|FC444354
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162279726|gb|FC455634.1|FC455634
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|37846322|gb|BJ604330.1|BJ604330
EST:     CAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: CAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCAC-TGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162224636|gb|FC401884.1|FC401884
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162258853|gb|FC434860.1|FC434860
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162257036|gb|FC432775.1|FC432775
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|67570351|gb|BJ943175.1|BJ943175
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162234134|gb|FC410348.1|FC410348
EST:     TCAGCGAGCCCAGGCTGCTGATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAC
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
EST: gi|162223268|gb|FC400237.1|FC400237
EST:     TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAG                         CCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT
genomic: TCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 165

CGCGGGAAGGCACACGCCCGGTACGTTTACGAATCAGCTGCAGAACACGTTCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgact ... tgtttggcagCCCATCATGGAGGCAGCTCTGGGGAACATTCCCGTGATCGCGTTCTGTGATACGGACTCTCCGATGAAGTACGTGGATATCGCGATTCCGGCGAACAACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGGGAAGGCACACGCCCGGTACGTTTACGAATCAGCTGCAGAACACGTTCAGCGAGCCCAGGCTGCTAATTTTGACGGACCCCCGCACTGATCACCAGgtgagtgactgaggtgggagacgatggatggtgggagcagagggggttgttttagggctggagggggtgaggaatggataaggtggagaagtggggcggtgtgtgacgatgagttgtattgtgttgtgttatgtttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT