1 5' 3' | 2 5' 3' | 3 5' 3' |
GATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtccttaaaaacctatttgccatgtcggtaagtggtttcaagtcttttgtcagaacttactgactcgcctgccactcatttgttacctccttttccatgcag
species | Physcomitrella patens |
transcript | PP1S48_101V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|208345923|gb|DC921094.1|DC921094
genomic: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: ANC-GTCAAGACAACGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTNTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|208361173|gb|DC954279.1|DC954279
genomic: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|37851284|gb|BJ609292.1|BJ609292
genomic: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: ACGGTCAAGGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|162273040|gb|FC449171.1|FC449171
genomic: ACGGTCAA-GACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|162273041|gb|FC449172.1|FC449172
genomic: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|162188134|gb|FC363900.1|FC363900
genomic: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|162182407|gb|FC358006.1|FC358006
genomic: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: CGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|208382944|gb|DC927694.1|DC927694
genomic: CGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|162177489|gb|FC353750.1|FC353750
genomic: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATAEST: gi|37847539|gb|BJ605547.1|BJ605547
genomic: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
EST: ANCGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTG ACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
genomic: AACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtcct ... ttccatgcagACTGCTCAATTACGTTTGGAGAACGCCACTCTATCCCGTAGGTTAAAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTCCTCAAATCGTGCGTCAGCACAACGGTCAAGACAAAGAAAGCAGGAGCGTCTGGACGAGCTCGAAATTTTGgtaaggtccttaaaaacctatttgccatgtcggtaagtggtttcaagtcttttgtcagaacttactgactcgcctgccactcatttgttacctccttttccatgcag
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAA