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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTTAGTGGTTGGACGCTTTCTGGGGCACCCAGTATACCACCTCAGTATCGTCAACAGgcaagttttagtagacgttagagttatttgtgatgcaacatgcagcaatgaataacaattctgattaggtgagttctaatgacagctgttagttttgcat...

Basic information

species Physcomitrella patens
transcript PP1S487_18V6.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208393071|gb|DC929566.1|DC929566
EST:     GTTGGACGCTTTCTGGGGCACCCAGTATACCACCTCAGTATCGTCAACAG                         ATTGTTGTGGACGACCAAACATATTTTCACAGTATATACTATTTTAACTGG
genomic: GTTGGACGCTTTCTGGGGCACCCAGTATACCACCTCAGTATCGTCAACAGgcaagtttta ... tttccaccagATTGTTGTGGACGACCAAACATATTTTCACAGTATATACTATTTTAACTGG
EST: gi|18370138|gb|BJ201740.1|BJ201740
EST:     GTTGGACGCTTTCTGGGGCACCCAGTATACCACCTCAGTATCGTCAACAG                         ATTGTTGTGGACGACCAAACATATTTTCACAGTATATACTATTTTAACTGG
genomic: GTTGGACGCTTTCTGGGGCACCCAGTATACCACCTCAGTATCGTCAACAGgcaagtttta ... tttccaccagATTGTTGTGGACGACCAAACATATTTTCACAGTATATACTATTTTAACTGG