1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTTGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCGgtgcgtgagcctctgctgccttcgagatgttgcaaaagctttccatcttggcctgcttgagattcgatgctggtcatattcgcatactgtgctttcttgt...
species | Physcomitrella patens |
transcript | PP1S47_78V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCG GTAGAGATGAATGGTGTGAATTGTTTTCA-CATGATAAAAAGTCTTCCGGCEST: gi|208387521|gb|DC933384.1|DC933384
genomic: TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCGgtgcgtgagc ... tgttgtgcagGTAGAGATGAATGGTGTGAATTGTTT-CAACATGATAAAAAGTCTTCCGGC
EST: TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCG GTAGAGATGAATGGTGTGAATTGTTTCAACATGATAAAAAGTCTTCCGGCTEST: gi|100414748|gb|BY956844.1|BY956844
genomic: TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCGgtgcgtgagc ... tgttgtgcagGTAGAGATGAATGGTGTGAATTGTTTCAACATGATAAAAAGTCTTCCGGCT
EST: TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCG GTAGAGATGAATGGTGTGAAATTGTTTCAACATGATAAAA-GTCTTCCGGC
genomic: TGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCGgtgcgtgagc ... tgttgtgcagGTAGAGATGAATGGTGTGAA-TTGTTTCAACATGATAAAAAGTCTTCCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCACAGTCAAGGTCCGATGTGTTGGCCCTCGCGTTGGCAGCCACAGTGTTGCTGCAAGGCTTGGTGTGGAAGTCCATTCAGCCCAGGCCTGTTGTCTCGgtgcgtgagcctctgctgccttcgagatgttgcaaaagctttccatcttggcctgcttgagattcgatgctggtcatattcgcatactgtgctttcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG