1 5' 3' | 2 5' 3' | 3 5' 3' |
CCTCACCGCTACCGAAGGACTCCAGAAAGCTGGCTGCGAAGAAGGCAAGACGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAGgttattttcgctcagagtttcaagctttgggggcattagtttttgtttctcaatatgaaaaattaacttttgtttggtttcatgggttgaatgtaatgtcctccgaagtatgcaaccagcatgatggcaagatggataattcgaacaggtgtgtcttcttgattgcag
species | Physcomitrella patens |
transcript | PP1S47_72V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCAEST: gi|67726911|gb|BJ977170.1|BJ977170
genomic: CGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
EST: CGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCAEST: gi|162237337|gb|FC412445.1|FC412445
genomic: CGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
EST: GGCACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCAEST: gi|18362523|gb|BJ194594.1|BJ194594
genomic: GGCACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
EST: GGATCCGGCGGAGTCGGCACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCAEST: gi|162224246|gb|FC399505.1|FC399505
genomic: GGATCCGGCGGAGTCGGCACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
EST: GGCGGAGTCGGCACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCAEST: gi|37839797|gb|BJ597805.1|BJ597805
genomic: GGCGGAGTCGGCACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
EST: GTCGGCACACATGTTATTNCAG GTTGCCAAGCACGTCCTTCAAGGGCTGCTCACGTAACAACAACAGGAAGTEST: gi|37839869|gb|BJ597877.1|BJ597877
genomic: GTCGGCACACATGTTATT-CAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCC-TCAA-GGCTGCTCACGTAACAACAACAGGAAGT
EST: TCGGCACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCAEST: gi|162196625|gb|FC374915.1|FC374915
genomic: TCGGCACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
EST: CGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACTACA-CAGGAAGTTCAEST: gi|67697068|gb|BJ957301.1|BJ957301
genomic: CGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
EST: GCGGAGTCGGCACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCAEST: gi|37846181|gb|BJ604189.1|BJ604189
genomic: GCGGAGTCGGCACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
EST: CACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGGCTGCTCACGTAACAACAACAGGAAAGTTEST: gi|37835120|gb|BJ593132.1|BJ593132
genomic: CACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAA-GGCTGCTCACGTAACAACAACAGG-AAGTT
EST: CACACATGTTATTCAG GTTGCCAAGCACGTCNTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCAEST: gi|162224247|gb|FC399506.1|FC399506
genomic: CACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
EST: CGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAG GTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
genomic: CGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAGgttattttcg ... ttgattgcagGTTGCCAAGCACGTCCTCAAGGCTGCTCACGTAACAACAACAGGAAGTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCACCGCTACCGAAGGACTCCAGAAAGCTGGCTGCGAAGAAGGCAAGACGGTGCTTGTTCTTGGTGGATCCGGCGGAGTCGGCACACATGTTATTCAGgttattttcgctcagagtttcaagctttgggggcattagtttttgtttctcaatatgaaaaattaacttttgtttggtttcatgggttgaatgtaatgtcctccgaagtatgcaaccagcatgatggcaagatggataattcgaacaggtgtgtcttcttgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA