1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTGGTGGTGAAGGTGAATCCCAATTTCAACGTTGTAGCAACAGCTTGTCTGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttcgaactccctgtgctgtgggtgtttacgttttcgagggcaagcgaagcttcggattaaactgagaaagttcggtagctagttgcgatgaat...
species | Physcomitrella patens |
transcript | PP1S47_5V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|18357467|gb|BJ189526.1|BJ189526
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|18344957|gb|BJ176998.1|BJ176998
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|100431216|gb|BY960085.1|BY960085
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|18356652|gb|BJ188711.1|BJ188711
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|100388316|gb|BY951918.1|BY951918
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|100423679|gb|BY976504.1|BY976504
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|208389036|gb|DC937369.1|DC937369
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|162248338|gb|FC422553.1|FC422553
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|67572635|gb|BJ945459.1|BJ945459
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|18343415|gb|BJ175453.1|BJ175453
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|162211220|gb|FC386932.1|FC386932
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|100368970|gb|BY984964.1|BY984964
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|18358244|gb|BJ190303.1|BJ190303
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|162242981|gb|FC417621.1|FC417621
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|18375136|gb|BJ206714.1|BJ206714
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCAEST: gi|18368931|gb|BJ201016.1|BJ201016
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
EST: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCG GAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
genomic: TGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttc ... ggtggtgcagGAGACGATGTCGAAAGAGCATGCGATGCGATTCCCTTTCATCGGCAGTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGTGGTGAAGGTGAATCCCAATTTCAACGTTGTAGCAACAGCTTGTCTGACGGTGTTCATAGGATGTCATCGGTCTGTGAAGCCCGCTCCTCCCTCGgtaagttttcgaactccctgtgctgtgggtgtttacgttttcgagggcaagcgaagcttcggattaaactgagaaagttcggtagctagttgcgatgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC