Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTAAGAAGTTTACTTTCCGCGGCGTCGATCTCGATGCTCTCCTCGACATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctgttcgatctcttaccgctgcatggaatttgaaacagtgcgatttgtgcccagaaactcatgtcgtgattgtttattggtccttttcgacat...

Basic information

species Physcomitrella patens
transcript PP1S47_42V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6102252|gb|AW126722.1|AW126722
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|7067374|gb|AW497229.1|AW497229
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162227580|gb|FC403522.1|FC403522
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162221576|gb|FC397593.1|FC397593
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67702997|gb|BJ963230.1|BJ963230
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|7147695|gb|AW509666.1|AW509666
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162227187|gb|FC403844.1|FC403844
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162221336|gb|FC398120.1|FC398120
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162233580|gb|FC410962.1|FC410962
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67701344|gb|BJ961577.1|BJ961577
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67724173|gb|BJ974432.1|BJ974432
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|7046944|gb|AW476781.1|AW476781
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162264291|gb|FC441393.1|FC441393
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162277884|gb|FC454347.1|FC454347
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162215437|gb|FC391933.1|FC391933
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162232848|gb|FC407501.1|FC407501
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|19790792|gb|BQ042057.1|BQ042057
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GGTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67726407|gb|BJ976666.1|BJ976666
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|7067085|gb|AW496940.1|AW496940
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|208348761|gb|DC909796.1|DC909796
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|7207504|gb|AW561504.1|AW561504
EST:     ATGAGCATGCACGAGCTCGTCGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGCTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162239764|gb|FC417163.1|FC417163
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67578444|gb|BJ950611.1|BJ950611
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|19783351|gb|BQ039997.1|BQ039997
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|7067375|gb|AW497230.1|AW497230
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|208385042|gb|DC911330.1|DC911330
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162259872|gb|FC436007.1|FC436007
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|15262097|gb|BI437407.1|BI437407
EST:     CTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: CTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162248361|gb|FC419755.1|FC419755
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67577697|gb|BJ949864.1|BJ949864
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67717901|gb|BJ968160.1|BJ968160
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162234864|gb|FC409311.1|FC409311
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162235948|gb|FC411691.1|FC411691
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67704304|gb|BJ964537.1|BJ964537
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|6167554|gb|AW145818.1|AW145818
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162277883|gb|FC454346.1|FC454346
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67710246|gb|BJ965909.1|BJ965909
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|7207481|gb|AW561482.1|AW561482
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162199029|gb|FC372380.1|FC372380
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162254108|gb|FC429632.1|FC429632
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162227581|gb|FC403523.1|FC403523
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|208400853|gb|DC925133.1|DC925133
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162225347|gb|FC401164.1|FC401164
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162218517|gb|FC395094.1|FC395094
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162261488|gb|FC438324.1|FC438324
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67717312|gb|BJ967571.1|BJ967571
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162264292|gb|FC441394.1|FC441394
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAA                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162227186|gb|FC403843.1|FC403843
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162259873|gb|FC436008.1|FC436008
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|7147889|gb|AW509811.1|AW509811
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|162234863|gb|FC409310.1|FC409310
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
EST: gi|67725829|gb|BJ976088.1|BJ976088
EST:     ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAG                         GTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG
genomic: ATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 32 (downstream exon)
Score: 83

CCTTTAAGAAGTTTACTTTCCGCGGCGTCGATCTCGATGCTCTCCTCGACATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctg ... gtatttgcagGTTTCAGCGTGGGTTGAAGCGCAAGCCGATGGCTCTTATCAAGAAGCTGCGCAAAGCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTTTAAGAAGTTTACTTTCCGCGGCGTCGATCTCGATGCTCTCCTCGACATGAGCATGGATGAGCTCGTTGAGCTGTTTCACGCCCGTGCACGCCGCAGgttcgtgctgttcgatctcttaccgctgcatggaatttgaaacagtgcgatttgtgcccagaaactcatgtcgtgattgtttattggtccttttcgacat

- - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT