1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTTTCTGTTGGTGACGCTATGGGCCGATCCTTGGTTAAGGATCTGATTTTGGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGGgtatatgatcctgccgctaagtcttgtatttatatatttttgaaaattcttattcgtatttttggaatgggggtagacagacttgggcatctttccgatg...
species | Physcomitrella patens |
transcript | PP1S47_31V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGG GAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGAEST: gi|162188960|gb|FC364350.1|FC364350
genomic: GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGGgtatatgatc ... cttctttcagGAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA
EST: GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGG GAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGAEST: gi|162200905|gb|FC377308.1|FC377308
genomic: GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGGgtatatgatc ... cttctttcagGAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA
EST: GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGG GAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA
genomic: GGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGGgtatatgatc ... cttctttcagGAGAAGAAGAGCAAAACGTTGAGATCCGATTGAGAACATTTGGGCCGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTCTGTTGGTGACGCTATGGGCCGATCCTTGGTTAAGGATCTGATTTTGGAGGAGTCAGTGGAGGATGTGCAGAGGCTGCTGTATCTTGCCTTACAGGgtatatgatcctgccgctaagtcttgtatttatatatttttgaaaattcttattcgtatttttggaatgggggtagacagacttgggcatctttccgatg
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT