Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggccttacactcctttgaagcttgctgtaatggaactagtgcgtgagtttcatttgtttttttatttttgacctagggtgtctgcgtgtttaaggc...

Basic information

species Physcomitrella patens
transcript PP1S47_277V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 5'ss of exon 2
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggccttacactcctttgaagcttgctg-taatggaactagtgcgtgagtttcatttgtttttttatttttgacctagggtgt-ctgcgtgtttaaggc
|| ||||| |||||||| || || || ||||||||| ||||||| |||||||| | ||| ||||||||||||||||| |||||| | ||  |  | |  ||||  |   |  |   |||   | ||  ||  | ||      | ||  ||||  |   ||   ||  || ||       ||  ||| ||| ||     | ||
CACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtaaagtgattgatctcttgcgatctatctaatgattatgtgaatgaatgagcatg--ttagcttcctacttgctcgtgagattgtgctgtgtaacatatgc

upper sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 5'ss of exon 2
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacgg--ccttacactcctttgaagcttg-ctgtaatggaactagtgcgtgagtttcatttgtttttttatttttgacctagg-gtgtctgcgtgtttaaggc
|| ||||| || ||||| || || || ||||||||| ||||||| |||||||| | ||| ||||||||||||||||| |||||| | ||  |  | |  |||  |   |||  |   ||| |   || || || |  | | | | |  |   |||      |||  ||  |||| |||  ||     |  |   |  ||     
CACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccctggcctccctatcgcgcatgactatgttagcaattgc-cactagtactgcatgtgcttgaatttatgaattaaatacggttatctccttct---

upper sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacg---------gccttacactcctttgaagcttgctgtaatggaactagtgcgtgagtttcatttgtttttttatttttgacctagggtgtctgcgtgtttaaggc
|| ||||| |||||||| ||||| || ||||||||| ||||||| |||||||| | ||| ||||||||||||||||| |||||| | ||  |  | |  ||||||         |||   |    |||| |  ||  ||   ||        ||| ||| || ||  |  | |||     ||| |  |         | |         
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat---------

upper sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G081102_T03 (Zea mays), 5'ss of exon 2
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggccttacactcctttgaagcttgctgtaatggaactagtgcgtgagtttcatttgtttt--tttatttttgacctagggtgtctgcgtgtttaaggc
|| ||||| |||||||| ||||| || ||||||||| ||||||| |||||||| | ||| ||||||||||||||||| |||||| | ||  |  | |  |||  |  | |   |   ||| |  ||  ||  ||   |  | | | |   |||  |||     |   | ||         |      ||||   ||  |   
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcatcgccattttttagcctacctacaac--atttcgcgtgcttgttgaattcaaactagctaataaacaggtcacttgtcctgcccattgcaatt

upper sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggccttac------actcctttgaagcttgctgtaatggaactagtgcgtgagtttca--tttgtttttttatttttgacctagggtgtc-tgcgtgtttaaggc
|| ||||| || ||||| ||||| || ||||||||| ||||||| |||||||| | ||| ||||||||||||||||| |||||| | ||  |  | |  |||  |  |||        || |  ||  ||| | |    |||   |  |||| ||| ||  |   ||  || ||||    |    |    || | |||   |       
CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgcttaccctctttcagccttccaatatgttgc--gtgcttgaattcaagacttagttgtttacagatagtttgccatgccctgcaaat-------

upper sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA09G34760.3 (Glycine max), 5'ss of exon 3
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggccttacactcctttgaagctt----gctgtaatggaactagtgcgtgagtttcatttgtttttttatttttgacctagggtgtctgcgtgtttaaggc-------------------------------------------
||||||||||| ||||| |||||||| |||   ||| ||||||| |||||||||| ||| |||||||| ||||| || || |||| ||| ||| ||   ||||       | | |   |||    ||     || |   | || ||  | || ||| |  ||||| ||   |   |  ||  ||  ||  |  || || | ||                                            
CATAACAATGTTATCCCAAACGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACTTGGTTCAATCAGCCAGCACGGAAGACAAGGAGACGATTGGgtaatttaacatattttcttgttattttgaaactttttagtaattaccgtgttagtct--tttgtgttaaaaagatcaac--agattgaattagtattgatggttgcttttaattctttgaaatgttgctgttgctgtattcttcag

upper sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgta--------cggccttacactcctttgaagcttgct--------------------------gtaatggaactag--tgcgtgagtttcat--ttgtttttttatttttgacctagggtgtctgcgtgtttaaggc
||||||||||| ||||| || ||||| |||   ||| ||||||| |||||||||| ||| |||||||| ||||| || || |||| ||||||| |    ||||             |     || |||||| |||  |                          ||||    |  ||  || || ||| | ||  ||  ||||   | |||||| |    |  |||  |  || ||  
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag--

upper sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 5'ss of exon 1
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggccttacactcctttgaagcttgctgtaatggaactagtgcgtgagtttcatttgtttttttatttttgacctagggtgtctgcgtgtttaaggc--
|||||||||||  | ||||| || || ||||||||| ||||||| |||||||| | ||| ||||||||||| || || ||||| |   ||||||||   |||| || |||   ||| | | | | |  ||         || ||   |||||||| | |    || |   |||||     |  | |      |||  ||   
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCCCGCAAAACCCGAAGAAGAGTTGgtatgggctttttctcttct-aggttaacttgtccatttcttgtcattgagtttc-tataccattgtggatttgaatggagtaggcataaaatttgtgggtt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18349800|gb|BJ181850.1|BJ181850
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|208380153|gb|DC927432.1|DC927432
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67698997|gb|BJ959230.1|BJ959230
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|208396407|gb|DC920073.1|DC920073
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|162258306|gb|FC434233.1|FC434233
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|162192959|gb|FC371942.1|FC371942
EST:     TGTGAGGACGTGGTTCAACCAGCCCCCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|100374751|gb|BY949051.1|BY949051
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67575524|gb|BJ948348.1|BJ948348
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|18369192|gb|BJ201277.1|BJ201277
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|37845862|gb|BJ603870.1|BJ603870
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67717319|gb|BJ967578.1|BJ967578
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|208352405|gb|DC906188.1|DC906188
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|208349966|gb|DC913674.1|DC913674
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|162237413|gb|FC412716.1|FC412716
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|18353103|gb|BJ185158.1|BJ185158
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67572247|gb|BJ945071.1|BJ945071
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|18358961|gb|BJ191021.1|BJ191021
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|162237414|gb|FC412717.1|FC412717
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67575789|gb|BJ948613.1|BJ948613
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|37850492|gb|BJ608500.1|BJ608500
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|37850237|gb|BJ608245.1|BJ608245
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|18371408|gb|BJ203010.1|BJ203010
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|18368948|gb|BJ201033.1|BJ201033
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67575451|gb|BJ948275.1|BJ948275
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67725836|gb|BJ976095.1|BJ976095
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67702984|gb|BJ963217.1|BJ963217
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|18361266|gb|BJ193331.1|BJ193331
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67698918|gb|BJ959151.1|BJ959151
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
EST: gi|67695614|gb|BJ955847.1|BJ955847
EST:     TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAG                         CGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC
genomic: TGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 15

CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggcctt ... gtatacgcagCGCGCCAGAAGAAATCTGTCGCTGTTTTCCCTCGACCTACCGCTGGACCCCTCCGCCCCGTCGTCCACTCTCAGACATTGAAGTACAATGCTAAGATCCG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgtacggccttacactcctttgaagcttgctgtaatggaactagtgcgtgagtttcatttgtttttttatttttgacctagggtgtctgcgtgtttaaggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC