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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGGGAACCGTTTTATGTGATCAAGTGTGTTATGTGTTTATGTTTCTCTCCGTTGCAACTTCAAATCTTGTCGCTACCTCACTTGCGCACAAGgttagtgctttcgaagtgtccctcgatgtgttttttctgctgttaagctccttaagcacagatagatgttttagatttgcttataatttttatattttactcactggtgttactatgtatgaggatgtagaggttgttcctgaagtaatagttgtattgcag

Basic information

species Physcomitrella patens
transcript PP1S47_276V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_276V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: AT2G21340.1 (Arabidopsis thaliana), 5'ss of exon 2
GTCCGGGAACCGTTTTATGTGATCAAGTGTGTTATGTGTTTATGTTTCTCTCCGTTGCAACTTCAAATCTTGTCGCTACCTCACTTGCGCACAAGgttagtgctttcgaagtgtccctcgatgtgttttttctgctgttaagctccttaagcacagatagatgttttagatttgcttataatttttatattttactcactggtgttactatgtatgaggatgtagaggttgttcctgaagtaatagttgtattgcag
|||| |  |||||  | |||||| |  ||||||||  ||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||| |   |||| |||   |        | | | ||       |||   || | |  |   |||  ||   ||     |     |||| |     |||||   |||  || || |  |  ||   | ||  || ||  || | || | |                       
GTCCTGCTACCGTCATCTGTGATTATTTGTGTTATACGTTCATGTTCCTCTCAGTTGCGACTTCAAATCTTGTTGCTACCTCTCTTGCTCGGCAGgtcagtttatc------attcttggactatgaatttggcctataataccttttattcattaat---cataagcaatttccaggatattttccaattggacacagtattagtaacttctaatagaat--agtgcttatgcag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162174402|gb|FC350473.1|FC350473
EST:     TTCTCTCCGTTGCAACTTCAAATCTTGTCGCTACCTCACTTGCGCACAAG                         AATAAGGAAGAGGCAGCACACCATCTTTCTCGAATGTTATTTCTAGCCGTG
genomic: TTCTCTCCGTTGCAACTTCAAATCTTGTCGCTACCTCACTTGCGCACAAGgttagtgctt ... tgtattgcagAATAAGGAAGAGGCAGCACACCATCTTTCTCGAATGTTATTTCTAGCCGTG