1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATCCCAACCTCATCCTGTCCAGCTCAAGGCCTTTGTCCCAATTTCTCAGCCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactgaaggctaagctctctatttgtctctctttagctttgtacacaaatcactgaaattaaggccattgctcaaacgtcacgaccgtacctcat...
species | Physcomitrella patens |
transcript | PP1S47_23V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAG CCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCGEST: gi|100399470|gb|BY972735.1|BY972735
genomic: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactg ... gtgtcaccagCCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCG
EST: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAG CCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCGEST: gi|18331578|gb|BJ163589.1|BJ163589
genomic: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactg ... gtgtcaccagCCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCG
EST: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAG CCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTEST: gi|208398077|gb|DC904382.1|DC904382
genomic: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactg ... gtgtcaccagCCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCT
EST: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAG CCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCGEST: gi|100451193|gb|CJ974643.1|CJ974643
genomic: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactg ... gtgtcaccagCCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCG
EST: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAG CCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCGEST: gi|162223997|gb|FC400355.1|FC400355
genomic: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactg ... gtgtcaccagCCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCG
EST: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAG CCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCGEST: gi|100351812|gb|BY964562.1|BY964562
genomic: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactg ... gtgtcaccagCCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCG
EST: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAG CCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCGEST: gi|100409507|gb|BY955967.1|BY955967
genomic: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactg ... gtgtcaccagCCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCG
EST: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAG CCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCGEST: gi|18331095|gb|BJ163101.1|BJ163101
genomic: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactg ... gtgtcaccagCCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCTTGCCAACATCCG
EST: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAG CCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCT
genomic: CCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactg ... gtgtcaccagCCATGCAAGTGTTGAAGCTGAGACGGAGCCCTTCACGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCCCAACCTCATCCTGTCCAGCTCAAGGCCTTTGTCCCAATTTCTCAGCCTGCTGCTCTCAAATCTGCCAGTCTTGTCGTCTCCCCTTCTCGCACCAGgtttgcactgaaggctaagctctctatttgtctctctttagctttgtacacaaatcactgaaattaaggccattgctcaaacgtcacgaccgtacctcat
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT