1 5' 3' | 2 5' 3' | 3 5' 3' |
GCGCAGTTGTATGTGAAGCAGAAAGAAGCCGATGCAGCACTCTACTCCAAAAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAGgtgctcctctctctctctccctctctctacctcttcgatgcggccggagatttgggttgtagaagacattttgtatgcatcgtttgcggttagatctcgaatgttaaaggaacgtcagagttccatgagcgttttgcacgatctgaagggcagtggcttgttttcccag
species | Physcomitrella patens |
transcript | PP1S47_210V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAG GAATTGTGGTGATGGCAGAGGCTCAEST: gi|162190618|gb|FC366256.1|FC366256
genomic: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAGgtgctcctct ... gttttcccagGAATTGTGGTGATGGCAGAGGCTCA
EST: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAG GAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGGEST: gi|162157967|gb|FC334927.1|FC334927
genomic: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAGgtgctcctct ... gttttcccagGAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGG
EST: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAG GAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGGEST: gi|162229476|gb|FC404809.1|FC404809
genomic: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAGgtgctcctct ... gttttcccagGAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGG
EST: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAG GAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGGEST: gi|162160815|gb|FC336714.1|FC336714
genomic: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAGgtgctcctct ... gttttcccagGAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGG
EST: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAG GAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGGEST: gi|162196038|gb|FC372196.1|FC372196
genomic: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAGgtgctcctct ... gttttcccagGAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGG
EST: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAG GAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGGEST: gi|162168092|gb|FC343782.1|FC343782
genomic: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAGgtgctcctct ... gttttcccagGAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGG
EST: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAG GAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGG
genomic: AAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAGgtgctcctct ... gttttcccagGAATTGTGGTGATGGCAGAGGCTCAAGCAGCCTACGTTAAGAGCATGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCAGTTGTATGTGAAGCAGAAAGAAGCCGATGCAGCACTCTACTCCAAAAACAAAGAAGCGGATGCAGCGCTGTACGCCAAACACAAAGAAGCTGAAGgtgctcctctctctctctccctctctctacctcttcgatgcggccggagatttgggttgtagaagacattttgtatgcatcgtttgcggttagatctcgaatgttaaaggaacgtcagagttccatgagcgttttgcacgatctgaagggcagtggcttgttttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG